Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06210 ATGAAAACCACTCTTCTTGTGTTGTTGTTGCTGCTTTCTAATCTTATTATTATATGTTCTTCTCCTGCCACCGATGCTGAATATGACAACTGCAACTGTGATGACGATGAAGGAGGGCTTTGGAGCATACATAGCATTCTTGTTGGCCAAAAAGTCAGTGACTTTTTCATTGCCATTGCTTATTTTTCCATACCCATTGAACTTCTTTACTTTGTTAGCCGTTCTAACGTTCCATTCAAATTGCTCTTCCTTCAATTTATTGCCTTCATTGTCCTCTGTGGCTTGACCCATTTACTCAATGCTTATTCTTATCATGGTCCTCCCTCCTTCCAGTTGCTTCTCTCCCTTACCCTTGCTAAGTTCCTTACTGCTCTTGTTTCATGTGCTACTGCATTGACCCTTCCCCCTCTCATCCCTCTTCTTCTCAAAATCAAGGTTAGGGAGCTCTTCTTGAGGCAAAACGTGATGGAATTGGGGCAAGAGGTTGGGATGATGAAGAAACAAAAGGAAGCAAGCTGGCATGTTAGGATGCTCACAAGGGAAATTAGGAAGTCTCTTGATAAGCATACCATCTTGTACACTACCCTTGTTGAGCTTTCAAAGGCATTGGATTTGCATAATTGTGCAGTTTGGATGCCTATCGAGGACAGAAGAGAAATGTACTTAACCCATGAATTGAAAGCAAACCCTGCAAAGAATTTTCATGATCCTATTCCTGTGAATGACCCTGATGTATTGGAGATAAGGAAAACTAAGGGGGTGAAGATTTTGAGGCCTGATTCTGCTCTAGGAGCTGCAAGTAGTGGTGCTGGACCTGGGGAGTTGGGTGCTGTGGCAGCTATTCGCATGCCATTACTTCATGTGTCAAATTTCAAAGGTGGCACACCAGTGTTGGTTGAGACATGTTATGCTGTACTGGTTTTGGTTCTTCCAAGTTCAAAGTCTAGAGTTTGGACCAGCCAAGAGATGGAGATAGTTGAAGTAGTTGCTGACCAGGTGGCTGTAGCCCTTTCTCATGCATCAGTTCTTGAAGAGTCTCAGCTAATGAGACAGAAACTGGAAGAACAGAACCGAGCATTGCAACAATCTAAAAAGGATGCAATGATGGCCAGCCAAGCTAGGAAGTCATTTCAGACAGTGATGAGCCATGGAATGAGGAAGCCTATGCATTCGATTATGGGGATACTTTCATTGTTTCAAGAGGATAATATGAAGCCTGAGCAGAAGATTATTGGTGACACAATGTTGAAAGTTGGCAATGTGCTCTCAAGTTTGATTAATGATATAATGGAGATTTCGGAAAATGAAAAGGGAGGCCTCCGGTTTGAGATGAAACCTTTCCATCTACATTCCATGTTAAGGGAAGCTGCTTGTATTGCCAAGTGCCTGTGTGTATATGGAGGCTTTGGCTTTGAAATTGATGTCCAGAAGTCTTTGCCTGAACAAGTTATAGGTGATGAAGCAAGGGCTTTTCAAGTAATTTTGCATATGATTGGGTATTTATTGTACATGCATAACAGAGAGAATCTCATTTTTCGAGTTTTTCTTGAGAATCATAGTGGAGATAAGGATGATAGAAGTCTTGGAATATGGAGATCAAGCAGTCAAATTGAGTATGTAAATATAAAATTTGATTTTCAGATTACTGGTGGTAGTTCTCAGTCAGAAGAATCAATTCCAACAAAACATTATACTTCTAGGAAGCAGTACTTCAACAATGAACCTAAGGAGGGCCTCAGCTTCAACATGTGCAAAAAGTTGGTACAGACAATGCAAGGTAATATATGGATATCACGGAACTCTCTGGGTTTGGTGCAAGGCATGGCACTTCTTCTCAAGTTTCAGATAGGACCATCACTTGGAAAATCCATATTTCCACCTAAACAATCTTCAAACTCACAGTTTAGAGGCCTAAAGGTTTTGTTAGCAGATGATGATGGTGTAAACAGGAGTGTGACCAAGAAGCTACTTGAGAAACTGGGTTGTCAAGTAACTGTTGTCTCATCAGGGTTTGAGTGTTTGGCTGCTATTAGTGGCTCTGGTAACTCATTCAAAATTATCCTGTTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTGGCAACGAGGATAAGGAAGTTTAATGGCCCTAATTGGCCCTTGATTATAGGTCTTATAGCAAGTGCAGAAGAGTTTGTGAAAGAGAAGTGCCTCTTAGCGGGAATGAATGGATTGATTAGAAAACCTATCCTCCTTCATGAGATAGCAGATGAACTTAGAACAGTACTGCAACGTGCAGGTGAAAAGATGTGA 2295 0.4122 MKTTLLVLLLLLSNLIIICSSPATDAEYDNCNCDDDEGGLWSIHSILVGQKVSDFFIAIAYFSIPIELLYFVSRSNVPFKLLFLQFIAFIVLCGLTHLLNAYSYHGPPSFQLLLSLTLAKFLTALVSCATALTLPPLIPLLLKIKVRELFLRQNVMELGQEVGMMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKALDLHNCAVWMPIEDRREMYLTHELKANPAKNFHDPIPVNDPDVLEIRKTKGVKILRPDSALGAASSGAGPGELGAVAAIRMPLLHVSNFKGGTPVLVETCYAVLVLVLPSSKSRVWTSQEMEIVEVVADQVAVALSHASVLEESQLMRQKLEEQNRALQQSKKDAMMASQARKSFQTVMSHGMRKPMHSIMGILSLFQEDNMKPEQKIIGDTMLKVGNVLSSLINDIMEISENEKGGLRFEMKPFHLHSMLREAACIAKCLCVYGGFGFEIDVQKSLPEQVIGDEARAFQVILHMIGYLLYMHNRENLIFRVFLENHSGDKDDRSLGIWRSSSQIEYVNIKFDFQITGGSSQSEESIPTKHYTSRKQYFNNEPKEGLSFNMCKKLVQTMQGNIWISRNSLGLVQGMALLLKFQIGPSLGKSIFPPKQSSNSQFRGLKVLLADDDGVNRSVTKKLLEKLGCQVTVVSSGFECLAAISGSGNSFKIILLDLHMPEMDGFEVATRIRKFNGPNWPLIIGLIASAEEFVKEKCLLAGMNGLIRKPILLHEIADELRTVLQRAGEKM. 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06210 764 FunFam Ethylene receptor 636 760 - -
Seca8g06210 764 Gene3D - 165 338 IPR029016 -
Seca8g06210 764 FunFam Ethylene receptor 4 340 434 - -
Seca8g06210 764 Pfam GAF domain 189 337 IPR003018 GO:0005515
Seca8g06210 764 ProSiteProfiles Histidine kinase domain profile. 380 618 IPR005467 -
Seca8g06210 764 SUPERFAMILY CheY-like 634 759 IPR011006 -
Seca8g06210 764 CDD REC_ETR-like 638 753 - -
Seca8g06210 764 Gene3D - 339 436 - -
Seca8g06210 764 CDD HisKA 371 433 IPR003661 GO:0000155|GO:0007165
Seca8g06210 764 Coils Coil 343 370 - -
Seca8g06210 764 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 358 438 IPR036097 GO:0000155|GO:0007165
Seca8g06210 764 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 27 762 - -
Seca8g06210 764 SMART gaf_1 187 347 IPR003018 GO:0005515
Seca8g06210 764 ProSiteProfiles Response regulatory domain profile. 639 757 IPR001789 GO:0000160
Seca8g06210 764 SMART HisKA_10 373 438 IPR003661 GO:0000155|GO:0007165
Seca8g06210 764 SMART REC_2 638 753 IPR001789 GO:0000160
Seca8g06210 764 PIRSF Ethylen_sen_hybr_HK 1 764 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Seca8g06210 764 Gene3D - 638 763 - -
Seca8g06210 764 CDD HATPase_ETR2_ERS2-EIN4-like 479 612 - -
Seca8g06210 764 Gene3D - 437 616 IPR036890 -
Seca8g06210 764 Pfam Response regulator receiver domain 640 752 IPR001789 GO:0000160
Seca8g06210 764 SUPERFAMILY GAF domain-like 190 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06210 Seca-Chr8 156103943 156108084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06210 25 762 Miscellaneous Gene Families AT3G04580 60.530 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g06210 GAF 6.3e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06210 K14509 - gmx:100811462 1227.23