Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06209 ATGGAAGGCAATGCGAGCTCATTGTTGGAGCAGAGCAGAAACAGTGTAACCGCCTCGCCGGCGAACGGGTTGTTGGGAGGCAATGATGGGTCCCACACGGACATGGACACGGTGTACCCTCCTCATTCCGTGGCGGAGAAGAAGAAGCGAGGGAGACCCAGGAAGTACGATTCTCCAGAACAAGCTCTCGCCGCTAGGAAAGCTGCTAACGCGTCGTCGTTTTTATCTCCCAAGAAATCTCACTCCTCTCTACTAGGCAATACAGGACAAGGCTTCACACCACACATTATTACTGTTGCTGCTGGTGATGATGTTGGCCAAAAAGTTATGCTGTTCTTACAACAAAGTAGGCGTGAGATGTGCATTATTTCTGCATCTGGTTCCATATCTAATGCCATTCTTAGTCAGCCAGCATCCTCGGGAGGCAATATTGCATATGAGGGTCAGTTTAACATTATTTCACTCACTGGTTCCTATGTCCATAATGAACTTGGAGGTTGGAGTGGTGGTCTCAGTGTATGCTTATCTAATTCTGATGGGCAATTCGTTGGTGGAAGCATTGCTGGACCCCTTAAAGCCGCTGGTCCAGTTCAGGTCATCGTTGGTACATTTTTTATGGACACCAAGAAGGACACTAGTGCCGGAACAAAAGGTGATGATGTTTCTAGCAGCAAGTTACCACCGTCAGTTGGTGAACCAGTATCAAGTTTAGATTTCCGCCCAGCAGTTGACTCTTACAGTAGGAATACACTCCGGGGAGATGAGGAGCATCAATCTATTGGGGGAAGTCATTTCATGCTTCAGCAATGTGGTGTGCATGTGACACCTTCCCATCCCTTGGAATGGGGAAGTGGTCCAGATTTAAGAAATGCTGGCTTTGACTTGACAGGAAGAATTGGTCTTGGAGAACACCACTCTCCTGAGAATGGGAACTATGATCAAATTCCTGATTGA 954 0.4748 MEGNASSLLEQSRNSVTASPANGLLGGNDGSHTDMDTVYPPHSVAEKKKRGRPRKYDSPEQALAARKAANASSFLSPKKSHSSLLGNTGQGFTPHIITVAAGDDVGQKVMLFLQQSRREMCIISASGSISNAILSQPASSGGNIAYEGQFNIISLTGSYVHNELGGWSGGLSVCLSNSDGQFVGGSIAGPLKAAGPVQVIVGTFFMDTKKDTSAGTKGDDVSSSKLPPSVGEPVSSLDFRPAVDSYSRNTLRGDEEHQSIGGSHFMLQQCGVHVTPSHPLEWGSGPDLRNAGFDLTGRIGLGEHHSPENGNYDQIPD. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06209 317 MobiDBLite consensus disorder prediction 211 234 - -
Seca8g06209 317 MobiDBLite consensus disorder prediction 1 26 - -
Seca8g06209 317 Gene3D - 94 223 - -
Seca8g06209 317 SUPERFAMILY AF0104/ALDC/Ptd012-like 90 205 - -
Seca8g06209 317 ProSiteProfiles PPC domain profile profile. 89 229 IPR005175 -
Seca8g06209 317 MobiDBLite consensus disorder prediction 41 61 - -
Seca8g06209 317 MobiDBLite consensus disorder prediction 73 87 - -
Seca8g06209 317 CDD DUF296 93 204 IPR005175 -
Seca8g06209 317 MobiDBLite consensus disorder prediction 1 87 - -
Seca8g06209 317 Pfam Plants and Prokaryotes Conserved (PCC) domain 94 204 IPR005175 -
Seca8g06209 317 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 23 238 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06209 Seca-Chr8 156092510 156097480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06209 28 317 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 46.199 2.31e-77 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06209 - - gmx:100809675 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06209 8 156092510 156097480 Seca8g06209 8 156092510 156097480 ECH