Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06205 ATGGCTTCTCTCTCTTGCTCACCCACTCACCTCGCCCCACTCATCAACGCCGGCGTCAACTCCACCGCCGCCGCTAACTACCTCTGCACTCAATTCGATGCCATCTCCCAAAAACTCACCGACACCACCTATGCCATCGACAACACTTACCTTCTCTTCTCAGCCTATCTCGTCTTCGCCATGCAGCTTGGTTTCGCCATGCTCTGCGCCGGTTCAGTTCGAGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTTGACGCCGCCGCAGGCGGCCTCTCCTACTACCTCTTTGGCTTCGCATTCGCCTTCGGAGCTCCTTCCAACGGCTTCATCGGCCGCCACTTTTTCGGTCTCAAAGAATATCCTTCCCCTACCGGAGACTACAGCTTCTTCCTCTACCAGTGGGCTTTTGCCATCGCTGCTGCTGGAATCACCAGCGGATCCATCGCTGAGAGGACTCAGTTCGTAGCTTACCTAATCTATTCTTCTTTCTTGACAGGCTTTGTTTATCCTATCGTCTCTCATTGGTTCTGGTCCTCTGATGGCTGGGCCAGCCCGACCCGAACTAACGGCAACGTTTTGTTCGGTTCCGGCGTCATCGATTTCGCTGGCTCTGGCGTGGTTCACATGGTTGGCGGGATAGCAGGGTTATGGGGAGCTTTCATCGAAGGCCCGAGAATCGGCCGGTTCGACCGGTCGGGCCGGTCCGTTGCCTTGCGTGGCCATAGCGCGTCCTTGGTTGTTCTCGGTTCGTTTCTGTTATGGTTCGGTTGGTACGGTTTCAATCCCGGTTCGTTTCTAACAATCGCGAAAGCTTACGGGAACAACAGAGGCGGTTATTATGGTCAGTGGAGTGCCATAGGGAGGACAGCTGTCACAACGACACTGGCTGGATGCACTGCGGCTCTAACAACTTTGTTCAGTAAACGGTTATTGGATGGCCACTGGAACGTGATTGACGTGTGTAACGGTTTGCTTGGCGGTTTCGCTGCCATAACGTCAGGTTGTTCTGTTGTTGAACCGTGGGCCGCGATTGTGTGTGGGTTTGTGGCCGCGTGGGTTTTGATTGGGCTCAACAAGTTGGCCCAAAAGGTTGAGTATGATGACCCTCTGGAAGCGGCGCAGCTTCACGGAGGGTGTGGCGCGTGGGGAGTGTTGTTCACAGGGTTGTTTGCTAAGGGGGAGTACGTGGCGGAGGTTTACAGCCCTGGGAGGCCTTATGGGTTGTTTATGGGTGGTGGAGGGAAGTTGCTGGCGGCGCAGGTGATTCAGATATTGGTGGTGTGTGGGTGGGTGACGGCGACGATGGCGCCGCTGTTTTATGGGCTTCATAAGATGAAGCTGTTGAGGATCTCCAATGATGATGAGACTGCAGGGATGGATATGACTAGGCATGGTGGCTTTGCTTATGCTTACCATGATGAAGATGATGGGTCTACTAAGAAGCCCAGTTTCATGATGGGTAGGATAGGGCCCGGTACTACCTCTCCGTCGCCCATGGCCACACCAGACCAGACTTCGCCGTTGCCAATGATTACACGACAAGTGTGA 1557 0.544 MASLSCSPTHLAPLINAGVNSTAAANYLCTQFDAISQKLTDTTYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNGFIGRHFFGLKEYPSPTGDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRTNGNVLFGSGVIDFAGSGVVHMVGGIAGLWGAFIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTIAKAYGNNRGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLDGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIVCGFVAAWVLIGLNKLAQKVEYDDPLEAAQLHGGCGAWGVLFTGLFAKGEYVAEVYSPGRPYGLFMGGGGKLLAAQVIQILVVCGWVTATMAPLFYGLHKMKLLRISNDDETAGMDMTRHGGFAYAYHDEDDGSTKKPSFMMGRIGPGTTSPSPMATPDQTSPLPMITRQV. 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06205 518 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Seca8g06205 518 PANTHER AMMONIUM TRANSPORTER 21 475 - -
Seca8g06205 518 NCBIfam ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca8g06205 518 FunFam Ammonium transporter 28 487 - -
Seca8g06205 518 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Seca8g06205 518 Gene3D Ammonium transporter AmtB like domains 24 489 IPR029020 -
Seca8g06205 518 MobiDBLite consensus disorder prediction 497 518 - -
Seca8g06205 518 MobiDBLite consensus disorder prediction 494 518 - -
Seca8g06205 518 SUPERFAMILY Ammonium transporter 44 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06205 Seca-Chr8 156048883 156050439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06205 26 504 Inorganic Solute Cotransporters AT1G64780 81.743 0.0 802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06205 K03320 K07573 gmx:100797209 863.218