Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06202 ATGATGAAAAAGGATTCAGGAGTAGTCAAAGGAGAAGTGGCAGCGGCAAAAAAGCCACGCTCTTCATCTTCAAGAAAAGGGTGCATGAAAGGAAAGGGTGGACCCGAGAATGCTCTTTGCACTTTCAAAGGAGTGAGACAAAGGACTTGGGGAAAATGGGTTGCAGAAATAAGAGAGCCTAATGGTGGGGCTAGGCTTTGGCTTGGCACTTTCAACACTTCCATTGAAGCCGCACTTGCCTATGATGATGCTGCAAGAAGGCTCTATGGTGCATCCGCCAAGCTCAATTTGGCTGCACCAGGAGACCCTTCCTCTCATCAGAATTTGACCAATATTCCTACAGAACCTGTTGCTCCTACCTTAGTCTCCAACGACACTAATTCCAGTAATAATATGGTGCTTATTGAAGAAGAAGAAGAAGAGATGAATAAGGGGTTGTTCTTTGAGAGTAGTTTGGAACCACAAAGTCTTACTCTTACCTGCTGGAGTACAAGTAACTACATCACTGATGATTTTCTGGAACTGAATGATACACTCGATCAAGGGCTTAAGGAATGGGATTCACTACTAGAGATATGA 579 0.4404 MMKKDSGVVKGEVAAAKKPRSSSSRKGCMKGKGGPENALCTFKGVRQRTWGKWVAEIREPNGGARLWLGTFNTSIEAALAYDDAARRLYGASAKLNLAAPGDPSSHQNLTNIPTEPVAPTLVSNDTNSSNNMVLIEEEEEEMNKGLFFESSLEPQSLTLTCWSTSNYITDDFLELNDTLDQGLKEWDSLLEI. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06202 192 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Seca8g06202 192 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Seca8g06202 192 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Seca8g06202 192 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 15 131 - -
Seca8g06202 192 MobiDBLite consensus disorder prediction 1 33 - -
Seca8g06202 192 CDD AP2 40 99 IPR001471 GO:0003700|GO:0006355
Seca8g06202 192 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Seca8g06202 192 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Seca8g06202 192 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Seca8g06202 192 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Seca8g06202 192 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06202 Seca-Chr8 156009773 156010351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06202 12 100 AP2-EREBP Transcription Factor Family AT5G18450 76.404 1.61e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g06202 AP2 5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06202 - - mtr:11435109 177.948