Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06197 ATGTTGTGCCATCATATGATGATGCAGACTGAAAAGAATGCATCTGCATTGTCTGTGATATTGATATTAACTCTTTCAAATGCCCTTTTTGTCTGTCCATCTGAAGGGCTCAATGCAGAAGGTAAATACCTTCTGGACATAAAAGGGAGATTGTTTGACATACACAACCATCTAGACAACTGGAACTCAAGTGATTCCACACCTTGTGGTTGGAAGGGTGTCAGATGCAGCACTGGCATCAATCCAGTGGTGGAGTCTCTTGACTTGCATGCAATGAATCTCTCAGGGTCTTTGTCTCCCAGCATTGGTGGTCTGGTTCACTTGTATCACCTTAATCTGTCTCAAAATACTTTGTCTGGGAGTATACCTAGGGAAATTGGAAACTGTTCAAGTTTGCAGCTTCTTGGTCTCAACAATAATCGGTTTGAAGGCCAAATTCCTGCTGAAACAGGTAGGCTTTCAAATTTAGAAGAATTGTATCTTTACAACAACAAACTATCTGGGCCTTTTCCAGAGGAAATTGGCAACCTTTCTTCACTCTCAGTACTTGTTGCATTCACCAATAACCTCAATGGATCTTTGCCACGTTCTTTTGGGAAACTTAAAAGTTTAAAACGTTTCCGAGCTGGGCAGAATATGATATCAGGAAGTCTGCCCCAAGAGATAGGTGGATGTGAGAGCTTGGAGTATCTTGGTTTAACTCAAAATCAGATAACTGGTGAGATACCAAAAGAACTTGGACTGCTCAAGAACATACAATATTTGGTCCTTCGGGAAAATAATCTTCATGGGGCCATACCCAAAGAGCTTGGAAACTGTTCAAATTTGGTGGTTCTTGCTCTATATCAGAATAATCTTGTGGAAGCAATTCCCAAGGAGCTGGGAAACCTTGCGCTCCTAAAAAGGTTATACCTTTACCGGAATGAGTTGACAGGAAATATTCCAAGGGAGATTGGGAACCTTTCTCTTGCAATAGAGATTGATTTCTCAGAGAACCTGCTGACAGGTGATATACCAGTTGAGTTGGTTAAAATAAAAGGCTTGCAACTGCTTCATCTCTTTCAGAACAAGCTAACTGGTGTCATCCCACATGAGGTTACCAGCTTGAAAAACCTGACTGAACTGGATCTCTCCATTAATTATCTCAAAGGTACTATTCCTGTTGAATTTCTGAATTTGACCAGCTTGATCTCCCTGCAACTCTTCAACAACTCATTAAGTGGTACCATTCCTAAAGCACTGGGGGCAAATAGTCCACTCTGGGTGCTTGATTTATCATCCAACTACTTGGTGGGAAGAATTCCAGTCCACCTTTGCCAACATTCTAACTTGATGCTGTTGAACTTAGGATCAAACAAGCTTACTGGAAATATCCCACATGGAATTACAAGCTGCAAGTCCTTGGTGTATCTTCGTCTCTTTGGTAACAATCTCAGAGGCAGGTTTCCTTCAAATTTGTGCAAACTTGTAAATCTTTCTGCAGTGGAGTTGGATCAGAATGACTTCACCGGCCCTATCCCTCCACAAATTGGTAACTGTCAAAATTTGCAAAGACTTCACCTTTCTAACAATCACTTTATGTCTGAATTGCCAAAAGAAATTGGTAACCTCTCACAGTTGGTCACTTTTAATGTCTCATCAAATTATCTTTTTGGTAGAGTGCCTCCGGAACTGTTCAATTGCAGGAATCTCCAAAGACTTGATCTCAGCCACAACTACTTCATAGGTGCTTTACCAGGTGAGATAGGAACTCTTTCACAATTGGAGCTTCTCAGGCTCTCACATAATAATTTTTCTGAGAATATTCCCATGTCAATGGGAAAACTCTTGCGATTGACTGAGCTACAAATGAGTGACAACTCGTTTTGTGGTTGCATTCCACATGAGTTAGGTGCCATCTCATCCTTACAGATTGCATTGAATCTCAGTTATAATAATCTCTCATGCCAGATCCCCTTTGAGCTTGGGAATCTTATTATGTTAGAATCCCTCCAACTCAACAATAACCATTTGAGTGGTAAAATTCCAAACTCCTTTAACCAACTGTCAAGTTTACTGGCTTGCAACTTCTCAAACAATGATCTTACTGGCCCTTTACCTTCCTTACTACTCTTTCAAAACTCCACATTCAGCTGTTTTTCTGGCAACAAAGGGCTCTGTGGAGGACACCTTGGCCCTTGCTCAAATTCCTTTTCATCCTCCCCTCCAAATAAACTAGGGAAAGCTCTAGCTATAGCTTCAGCTGTTGTTAGTGGGGTTTCTTTGGTTTTAATTGTAGTCCTTATATATCTCATGAGAATACCAGTGGATTCTATTGTGCCACAGCAAGATATAGATGGACCACACTTTCCACCTGTGACAGACATGTACTTCTTCCCGAAGGAGGAGTTAACTTTCCAAGATGTGGTTGAAGCTACTGAAAATTTTCATTCCAAATATATAATTGGAAAGGGAGGTAGTGGAACTGTGTACAGAGCAGATATATCAACTGGTCATGCAATTGCTATTAAGAAGCTGATGTCAAGCAGTGACAGCATCCATGTAAATGGTTGCTTCCGTGCTGAAATCTTAACTTTGGGAAAAGTAAGGCATCGGAATATTGTGAAATTATATGGTTTCTGCAACTACCATGGCTCCAATATAATACTTTACGAGTACATGGCAAAGGGTAGTTTGGGGGAGTTACTTCATGGAGCATCCTCTAGTCTTGATTGGTATTCTCGGTTTAGAATTGCTCTTGGAACTGCAGAAGGACTCTCTTATTTGCACCATGATTGCAAGCCTAGGATTATCCACCGTGATATAAAGCCCAATAACATACTTATTGATCATGAATTTGAAGCTCATGTTGGGGATTTTGGCTTGGCAAAACTGATTGATATGTCACGATCTAAATCAGTGTCTGCAGTTGTAGGTTCCTATGGCTACATTGCCCCTGAGTATGCATACACAATGAAAGTCACGGAAAAATGTGATGTATACAGCTATGGAGTTGTCCTTTTGGAGTTGTTGACTGGTAAGAAGCCAATCCAATCGTTAGATCAAGGTGGTGATCTTGTCACATGGGTGAGAAATCAAATCTACAAATATTCGTTGTCATTGGACATCATTGATGCTCGATTGCACCTACTAGATGAAATAGATGTCGCTCAAACTTTTGATGTCTTAAAAATTGCTCTACTTTGCACCGACACGTCTCCTTCTAGACGCCCAACTATGCGGAGTGTTGTGTCAATGCTTACAAGTTCTAGCAAAAGGACAGAGCAAACCTCATTTTCTACATGTCAAGAATCAAGCAACATGAAAGGATAA 3312 0.4067 MLCHHMMMQTEKNASALSVILILTLSNALFVCPSEGLNAEGKYLLDIKGRLFDIHNHLDNWNSSDSTPCGWKGVRCSTGINPVVESLDLHAMNLSGSLSPSIGGLVHLYHLNLSQNTLSGSIPREIGNCSSLQLLGLNNNRFEGQIPAETGRLSNLEELYLYNNKLSGPFPEEIGNLSSLSVLVAFTNNLNGSLPRSFGKLKSLKRFRAGQNMISGSLPQEIGGCESLEYLGLTQNQITGEIPKELGLLKNIQYLVLRENNLHGAIPKELGNCSNLVVLALYQNNLVEAIPKELGNLALLKRLYLYRNELTGNIPREIGNLSLAIEIDFSENLLTGDIPVELVKIKGLQLLHLFQNKLTGVIPHEVTSLKNLTELDLSINYLKGTIPVEFLNLTSLISLQLFNNSLSGTIPKALGANSPLWVLDLSSNYLVGRIPVHLCQHSNLMLLNLGSNKLTGNIPHGITSCKSLVYLRLFGNNLRGRFPSNLCKLVNLSAVELDQNDFTGPIPPQIGNCQNLQRLHLSNNHFMSELPKEIGNLSQLVTFNVSSNYLFGRVPPELFNCRNLQRLDLSHNYFIGALPGEIGTLSQLELLRLSHNNFSENIPMSMGKLLRLTELQMSDNSFCGCIPHELGAISSLQIALNLSYNNLSCQIPFELGNLIMLESLQLNNNHLSGKIPNSFNQLSSLLACNFSNNDLTGPLPSLLLFQNSTFSCFSGNKGLCGGHLGPCSNSFSSSPPNKLGKALAIASAVVSGVSLVLIVVLIYLMRIPVDSIVPQQDIDGPHFPPVTDMYFFPKEELTFQDVVEATENFHSKYIIGKGGSGTVYRADISTGHAIAIKKLMSSSDSIHVNGCFRAEILTLGKVRHRNIVKLYGFCNYHGSNIILYEYMAKGSLGELLHGASSSLDWYSRFRIALGTAEGLSYLHHDCKPRIIHRDIKPNNILIDHEFEAHVGDFGLAKLIDMSRSKSVSAVVGSYGYIAPEYAYTMKVTEKCDVYSYGVVLLELLTGKKPIQSLDQGGDLVTWVRNQIYKYSLSLDIIDARLHLLDEIDVAQTFDVLKIALLCTDTSPSRRPTMRSVVSMLTSSSKRTEQTSFSTCQESSNMKG. 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06197 1103 Gene3D Ribonuclease Inhibitor 152 243 IPR032675 -
Seca8g06197 1103 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 36 195 - -
Seca8g06197 1103 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 780 886 - -
Seca8g06197 1103 Gene3D Ribonuclease Inhibitor 418 731 IPR032675 -
Seca8g06197 1103 Gene3D Phosphorylase Kinase; domain 1 786 886 - -
Seca8g06197 1103 Pfam Protein kinase domain 810 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06197 1103 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Seca8g06197 1103 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Seca8g06197 1103 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 196 288 - -
Seca8g06197 1103 SMART LRR_typ_2 369 392 IPR003591 -
Seca8g06197 1103 SMART LRR_typ_2 513 536 IPR003591 -
Seca8g06197 1103 SMART LRR_typ_2 153 177 IPR003591 -
Seca8g06197 1103 SMART LRR_typ_2 249 273 IPR003591 -
Seca8g06197 1103 SMART LRR_typ_2 585 609 IPR003591 -
Seca8g06197 1103 SMART LRR_typ_2 537 561 IPR003591 -
Seca8g06197 1103 SMART LRR_typ_2 105 129 IPR003591 -
Seca8g06197 1103 SMART LRR_typ_2 658 681 IPR003591 -
Seca8g06197 1103 SMART LRR_typ_2 393 417 IPR003591 -
Seca8g06197 1103 SMART LRR_typ_2 297 321 IPR003591 -
Seca8g06197 1103 Gene3D Ribonuclease Inhibitor 344 417 IPR032675 -
Seca8g06197 1103 Gene3D Ribonuclease Inhibitor 39 151 IPR032675 -
Seca8g06197 1103 Gene3D Transferase(Phosphotransferase) domain 1 887 1101 - -
Seca8g06197 1103 Pfam Leucine rich repeat 539 598 IPR001611 GO:0005515
Seca8g06197 1103 MobiDBLite consensus disorder prediction 1078 1103 - -
Seca8g06197 1103 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 317 410 - -
Seca8g06197 1103 SUPERFAMILY L domain-like 40 339 - -
Seca8g06197 1103 SUPERFAMILY RNI-like 362 708 - -
Seca8g06197 1103 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 417 731 - -
Seca8g06197 1103 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 348 1080 - -
Seca8g06197 1103 ProSitePatterns Protein kinases ATP-binding region signature. 815 838 IPR017441 GO:0005524
Seca8g06197 1103 SMART serkin_6 809 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06197 1103 Gene3D Ribonuclease Inhibitor 244 342 IPR032675 -
Seca8g06197 1103 ProSiteProfiles Protein kinase domain profile. 809 1092 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06197 1103 SUPERFAMILY Protein kinase-like (PK-like) 790 1080 IPR011009 -
Seca8g06197 1103 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 887 1098 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06197 Seca-Chr8 155960381 155964764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06197 62 1080 Receptor kinase-like Gene Family AT1G73080 40.339 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca8g06197 Pkinase 2.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06197 - - psat:127091273 1644.4