Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06190 ATGAACTGCTTCCCGTGTTGTGGCCCTAAGAAAAGCAATAGCAAGAGGGAGCATGGTTCTACAACACCGCACGAAACTGTTGCAGCAAAAACATCAGATATGAAGAAACAAAGGCCAGATGAGCAGCTAAACCAAGCTGACAATGCAAATTTTAAGGCACAAAATTTCACATTCCGTGAATTAGCAACTGCAACAAAGAATTTCCGTCAGGAATGCGTCCTGGGTGAAGGAGTCTATGGCAGAGTGTATAGAGGCACAATTCCTGCAACAGGACAGGCTGTAGCTGTGAAGCAACTCGATCGACATGGAACGGAAAACAGTAAGGAATTTCTGTCAGAGGTTATGGCGCTAAGTCTCTTACAGCATGAAAATCTGGTCAGTCTCATTGGTTATTGTGCTGATGGCGATCAACGTCTTTTGGTATATGATTTCGTTCTTGGCTGTACTCTAGAAGATCGTCTTCTTGGTACTTACCCTTTCTTTCTTTATATATCATCTTATGCAGAGAATAAAACGGATCAACCTCCATTAAATTGGTATGAAAGAATGAAAGTTGCAGCTGGTGCTTCTAAAGGACTCCAATACTTGCATGACAGTGCCAATCCCCCAGTTATATACCGAGACTTCAAAGCCTCCAACATCTTGCTGGATAATGATCTTAATCCAAGACTAATGGATTTTGGAATGTCTAAGATTTCTGGTGCAGACAAGATGAATAATGCACCTCCAAGAGTTATGGGCACCTATGGTTACTGTGCTCCAGAATATGCAAGATCAGGTCAACTCACCTTTAAATCAGATGTATACAGTTTTGGAGTTGTCTTGCTAGAGCTCATAACTGGACGACGTGCCATTGACACCACAAGACCAAATGAAGAGCAAAACTTAGTTTCATGGGCACAACCCTTATTTAGGGACCCAAAAAGATATCCTGATATGGCAGATCCTGTTCTTAATAAACAGTTCCCAGAAAAGGATCTGAATCAAGCTGTTGCAATTGCAGCCATGTGCTTACAGGAGGAAGCAGAAGCTCGTCCTTATATGAGTGATGTTGTTACTGCTCTGAGTTTTCTTTCCATTGTTCCTCCAGAGGGTATGGCACCCCCTCTGCCCCCTGCCCCTTCGATCTCTAAGGCTTGTGGAAGCGCAAGGGAAAGTGAATGTGAGAGTGAGAGTGTTGTGAGTGAAAGTGAGAGTGAAAGTGAAACAGAATCTGATAAGGAGAGCCACAATGGAGATGGTTCAGACTGTGAGGAAGGGGAAAGTGAAAAACATGGTTCTAAAAGCCATCGTAAACATGTGCTTTCCATCAAATCAAGCCGCAAAAGCAGCACAAGATCAAGGAAAGGAACTCTTAGTTCAGATTCAGGAGATGGAAGCATTTCTTCCAGCAGCAAAAGCAGTAGGAAATCACATGGTGAAGATGGTAATATAAGCAAGAAGACAAGCAGAAAATCTTCTGTTAGAGATTTAAGCCAGAAGAGCAGCAAGAAATCTTCACCTGAAGATTTAAGTCAGAAGAGCAGCAAGAAATCTTCACCTGAAGATTTAAGCCAGAAGAGCAGCAGGAAATCTTCATCCAAAGAATTAAGCCAGAAGAGCAGCAGAAAATCTTCATCCAAAGAATTAAGCCAGAAAAGCAGCAGAAAATCTTCCATCAGAGATTTAAGCCATAAGATGAGTGGAAAATCCTCTATCAAAGCTTTAAGCCACAAGAGTAGTAAGAGATCAGAAGATGGAAGCATTTCACGTGAGAGAAGGGCATCCTCCCATGGTTCTTCAAGCCGTCATAGCAGCAGTGTCAGTGAGAGTGTTCACTCAGACCTTAACAGCAGCAGCAGAAGAACAGAGGAAGAGAGCATACAGTTACACCATGGAAGCAGCATGGGATCAGATGAGGGAAGTGGTCACCCTTTTGATCGTATGAGCAGCAGTGAATCAGGTGAGGGAAGTGTTTATTCACACTGA 1968 0.4289 MNCFPCCGPKKSNSKREHGSTTPHETVAAKTSDMKKQRPDEQLNQADNANFKAQNFTFRELATATKNFRQECVLGEGVYGRVYRGTIPATGQAVAVKQLDRHGTENSKEFLSEVMALSLLQHENLVSLIGYCADGDQRLLVYDFVLGCTLEDRLLGTYPFFLYISSYAENKTDQPPLNWYERMKVAAGASKGLQYLHDSANPPVIYRDFKASNILLDNDLNPRLMDFGMSKISGADKMNNAPPRVMGTYGYCAPEYARSGQLTFKSDVYSFGVVLLELITGRRAIDTTRPNEEQNLVSWAQPLFRDPKRYPDMADPVLNKQFPEKDLNQAVAIAAMCLQEEAEARPYMSDVVTALSFLSIVPPEGMAPPLPPAPSISKACGSARESECESESVVSESESESETESDKESHNGDGSDCEEGESEKHGSKSHRKHVLSIKSSRKSSTRSRKGTLSSDSGDGSISSSSKSSRKSHGEDGNISKKTSRKSSVRDLSQKSSKKSSPEDLSQKSSKKSSPEDLSQKSSRKSSSKELSQKSSRKSSSKELSQKSSRKSSIRDLSHKMSGKSSIKALSHKSSKRSEDGSISRERRASSHGSSSRHSSSVSESVHSDLNSSSRRTEEESIQLHHGSSMGSDEGSGHPFDRMSSSESGEGSVYSH. 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06190 655 Gene3D Transferase(Phosphotransferase) domain 1 164 360 - -
Seca8g06190 655 MobiDBLite consensus disorder prediction 372 655 - -
Seca8g06190 655 MobiDBLite consensus disorder prediction 403 428 - -
Seca8g06190 655 Pfam Protein kinase domain 70 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06190 655 MobiDBLite consensus disorder prediction 468 561 - -
Seca8g06190 655 ProSiteProfiles Protein kinase domain profile. 68 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06190 655 MobiDBLite consensus disorder prediction 11 38 - -
Seca8g06190 655 FunFam Serine/threonine-protein kinase PBS1 164 366 - -
Seca8g06190 655 MobiDBLite consensus disorder prediction 638 655 - -
Seca8g06190 655 ProSitePatterns Protein kinases ATP-binding region signature. 74 97 IPR017441 GO:0005524
Seca8g06190 655 Gene3D Phosphorylase Kinase; domain 1 27 144 - -
Seca8g06190 655 MobiDBLite consensus disorder prediction 429 445 - -
Seca8g06190 655 SUPERFAMILY Protein kinase-like (PK-like) 54 378 IPR011009 -
Seca8g06190 655 FunFam probable serine/threonine-protein kinase RLCKVII 40 144 - -
Seca8g06190 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Seca8g06190 655 MobiDBLite consensus disorder prediction 571 592 - -
Seca8g06190 655 PANTHER OS07G0668900 PROTEIN 3 359 - -
Seca8g06190 655 MobiDBLite consensus disorder prediction 446 467 - -
Seca8g06190 655 MobiDBLite consensus disorder prediction 593 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06190 Seca-Chr8 155907369 155910274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06190 1 397 Glycoside Hydrolase AT3G07070 54.745 6.14e-152 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca8g06190 Pkinase 4.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06190 - - gmx:100804526 682.945