Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06178 ATGTTTAAGTTTCTGAAAGAGGTCGTGGGTGGATCTGGAACTGGCCTCAAGGATCTCCCATACAATATCGGCGAACCTTACCCTTCTGCGTGGGGCTCTTGGGTTCATTGCCGCGGCACCTCCAAGGATGATGGTTCTCCGGTGTCAATCTTTTCTCTATCTGGAAGCAATGCTCAGGATGGACATTTAGCTGCGGGTCGTAACGGTGTCAAGCGTCTACGCACTGTTAGGCATCCAAATATTTTGTCATTTCTTCACAGTACCGAGATCGAAACTTTTGATGCCGGTTCTCCCAAGGTCACAATTTATATTGTGACCGAACCTGTAATGCCACTGTCAGATAAGATTAAGGAGTTGGGCCTTGAAGGTACACAAAGGGATGAATATTATGCTTGGGGCCTGCATCAGATAGCAAAAGCTGTGAGCTTCTTAAATAATGATTGTAAACTTGTTCATGGTAATGTTTGCTTGGCTAGCGTTGTTGTTACGCAAACTTTGGACTGGAAACTCCATGCTTTTGATGTTCTGTCAGAGTTTGATGGGAGTAATGAATCTTCCGCTGGGCAAATGCTGCAATATGCATGGCTTGTTGGATCTCAATACAAATCAATGGAACTTGCAAAATCTGACTGGGCTGTAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGTTGTCTAATCTATGAGCTATTCTCTGGTATAAAATTGGGCAAAACGGAGGAGTTACGCAACACTGCCTCCATTCCAAAGTCTCTGCTTCCAGATTACCAGCGGCTACTGAGCTCCATGCCTTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGCGAGTATTTTCAAAATAAGTTGGTAGACACAATACATTTCATGGAAATTCTCAGTTTGAAAGATAGTGTTGAGAAGGACACCTTCTTCCGCAAGCTTCCAAATTTAGCAGAGCAGCTTCCTCGTCAGATTGTGTTGAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCCCCTGCTTTGACTGCATTGTTGAAAATGGGTTCCTGGCTTTCAGCTGAGGAGTTCCGTGTCAAGGTGCTTCCAACAATTATTAAACTCTTTGCCTCCAATGACCGAGCAATTCGAGTTGGCCTTCTTCAACATATTGATCAATTTGGAGAATCATTATCAGCACAAGTTGTTGACGAGCAGGTTTACCCTCATGTTGCTACCGGTTTCTCTGATACATCTGCTTTTCTAAGGGAACTTACTCTTAAGTCCATGTTAATTCTGGCTCCAAAGCTGTCTCAAAGGACCATTTCGGGATCATTATTAAAGCATCTGTCGAAGTTACAGGTTGATGAAGAACCAGCAATACGAACAAATACTACCATCTTATTAGGAAATATTGCAAGCCACTTAAATGAAGGGACAAGAAAAAGAGTGTTGATTAATGCATTTACAGTCCGTGCTTTACGTGATACTTTTCCACCTGCTAGAGGAGCAGGTATTATGGCTTTATGTGCCACCAGTTCCTACTATGACATCACTGAAATCGCTACTCGGATTCTTCCTAACGTTGTTGTACTCACAATTGATCCTGACAGTCTTCAGGTTCCAAATAGAGATCATTCTTATGATTGCACCTTTGGTTATTTCTCATTTTTCAAGGAAGTGATTATATGTTATTCTTGTTATGATTCGAACAGTGACGTTCGGTCTAAGGCATTTCAATCCGTTGATCAATTTTTGCAGATGGCAAAGCAATATTATGAAAAGACAAATGCAGCAGAGCCTACGGGGGGTGCAGGCACGGGAATCTCATCAATTCCAGGAAATGCAAGTTTACTTGGATGGGCTATGAGCTCCTTGACCCTGAAGGGTAAACCTTCTGATCATGCTCCAGTTGCTTCTGCAAGTTCTAATGCACTTACTCCAACAACTTCTAATGCCAGCTCAGCTGTAGATACACCTTCAACAGCACCTGTCCGTGTAAGCTCCACAACAGATTTTGCTGAACATCCTGTTCCTACATCTCCTACATCAACGGATGGCTGGGGGGAACTAGAGAATGGAATCGATGAGGAGCCTGAAAATGACAAGGATGGGTGGGATGATCTGGAACCGCTTGAAGAAACAAAGCCAGCCCTTGCGAACATTCAAGCAGCTCAAAGGCGGCCAGTTTCTCAACCTGTTTCACAGACAAAACAAGCCTCTGGTTTGCGATCCAAAAGTACACCAAAGTTGAACAAGGATGGAGATGATGATTTGTGGGGTTCCATAGCGGCTCCTGCTCCTAAAACATCAAAACCTTTAAATTTGAAATCAACTGCAACTGATGATGATGATCCCTGGGCTGCCATTGCTGCCCCTGCACCCACTACTAAGGCCAAGCCCTTGTCAGCTGGAAGAGGCCGGGGAGCTAAACCTGCTGCTTCAAAATTAGGTGCTCAGCGGATAAACCGGACATCATCTGGGATGTAA 2484 0.438 MFKFLKEVVGGSGTGLKDLPYNIGEPYPSAWGSWVHCRGTSKDDGSPVSIFSLSGSNAQDGHLAAGRNGVKRLRTVRHPNILSFLHSTEIETFDAGSPKVTIYIVTEPVMPLSDKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVCLASVVVTQTLDWKLHAFDVLSEFDGSNESSAGQMLQYAWLVGSQYKSMELAKSDWAVIKKSPPWAIDSWGMGCLIYELFSGIKLGKTEELRNTASIPKSLLPDYQRLLSSMPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAAPALTALLKMGSWLSAEEFRVKVLPTIIKLFASNDRAIRVGLLQHIDQFGESLSAQVVDEQVYPHVATGFSDTSAFLRELTLKSMLILAPKLSQRTISGSLLKHLSKLQVDEEPAIRTNTTILLGNIASHLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEIATRILPNVVVLTIDPDSLQVPNRDHSYDCTFGYFSFFKEVIICYSCYDSNSDVRSKAFQSVDQFLQMAKQYYEKTNAAEPTGGAGTGISSIPGNASLLGWAMSSLTLKGKPSDHAPVASASSNALTPTTSNASSAVDTPSTAPVRVSSTTDFAEHPVPTSPTSTDGWGELENGIDEEPENDKDGWDDLEPLEETKPALANIQAAQRRPVSQPVSQTKQASGLRSKSTPKLNKDGDDDLWGSIAAPAPKTSKPLNLKSTATDDDDPWAAIAAPAPTTKAKPLSAGRGRGAKPAASKLGAQRINRTSSGM. 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06178 827 SUPERFAMILY ARM repeat 293 588 IPR016024 -
Seca8g06178 827 MobiDBLite consensus disorder prediction 722 827 - -
Seca8g06178 827 Gene3D - 282 539 IPR011989 -
Seca8g06178 827 Gene3D Transferase(Phosphotransferase) domain 1 110 280 - -
Seca8g06178 827 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 9 806 - -
Seca8g06178 827 SUPERFAMILY Protein kinase-like (PK-like) 36 287 IPR011009 -
Seca8g06178 827 MobiDBLite consensus disorder prediction 635 686 - -
Seca8g06178 827 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06178 827 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Seca8g06178 827 ProSiteProfiles HEAT repeat profile. 366 404 IPR021133 -
Seca8g06178 827 MobiDBLite consensus disorder prediction 630 708 - -
Seca8g06178 827 MobiDBLite consensus disorder prediction 689 706 - -
Seca8g06178 827 SMART serkin_6 37 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06178 827 MobiDBLite consensus disorder prediction 723 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06178 Seca-Chr8 155766624 155776880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06178 70 291 MAP Kinase Kinase Kinase AT5G66850 26.778 3.21e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Seca8g06178 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06178 K08876 - gmx:100792884 1371.68