Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06173 ATGTATTTTCTCTGTTTCTTGCTTCTGCAGAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCACAACCAAGTAATATGATGCTTTCATTACGGGGTTCTCCTGTTTACCCTACTGTCAATTCTCCAACTACACCAGGTCAGCAGTCATATACAGGAGGAATTACAAATTGGTCGAGAGCATCTTATGTTCCTACCCCACGCTGGCAAGGCCCGTCAAGTTATACACCTTTAATTCTACCTCATGGAGTGGTTTCCGTGCCCGGATGGAGTGCATACAGTGGCCAAATGGGATCAATATCTACTTCAGACAGTCCACAGCAATCAATGGGAAATGGTCAAACATATGGAACTTCTCGCCAAGGTGAATTAGAAAATGCTGGATCACATGGGGCATATTCTCAATTCCGTGCTGGCACTATTCCTGTAGGCTTTTATGCATTGCAAAGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAATTCTACATGAAGACAGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTCCACCACCCGCGTGAGAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATAGGCCTTCCTTTACGTCCTGGAGAGCCTTTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGGAATTTTCACCTATATTATACCTGCATCGCCTTCAGCTGATACCTCAGGAAGACGTCTGTTAGGATCTTCATCTGGAACTGCTGCATTAAATTTATCGTCAGAAGGACTTGTTGAGTCAAGCTCAGCAAAGCCCAGGAGGCTCTCAGTATCAGAGACAAGACAGATTCCTTCTGGTGATGATGACATTGATGATGATGGATGA 933 0.448 MYFLCFLLLQNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRGSPVYPTVNSPTTPGQQSYTGGITNWSRASYVPTPRWQGPSSYTPLILPHGVVSVPGWSAYSGQMGSISTSDSPQQSMGNGQTYGTSRQGELENAGSHGAYSQFRAGTIPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYIIPASPSADTSGRRLLGSSSGTAALNLSSEGLVESSSAKPRRLSVSETRQIPSGDDDIDDDG. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06173 310 ProSiteProfiles Zinc finger C3H1-type profile. 170 198 IPR000571 GO:0046872
Seca8g06173 310 MobiDBLite consensus disorder prediction 277 310 - -
Seca8g06173 310 SUPERFAMILY CCCH zinc finger 12 37 IPR036855 GO:0046872
Seca8g06173 310 MobiDBLite consensus disorder prediction 110 137 - -
Seca8g06173 310 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 218 243 IPR000571 GO:0046872
Seca8g06173 310 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 12 36 IPR000571 GO:0046872
Seca8g06173 310 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 172 197 IPR000571 GO:0046872
Seca8g06173 310 SUPERFAMILY CCCH zinc finger 219 243 IPR036855 GO:0046872
Seca8g06173 310 SUPERFAMILY CCCH zinc finger 174 200 IPR036855 GO:0046872
Seca8g06173 310 ProSiteProfiles Zinc finger C3H1-type profile. 9 37 IPR000571 GO:0046872
Seca8g06173 310 FunFam CCCH type zinc finger protein 168 257 - -
Seca8g06173 310 ProSiteProfiles Zinc finger C3H1-type profile. 216 244 IPR000571 GO:0046872
Seca8g06173 310 MobiDBLite consensus disorder prediction 277 299 - -
Seca8g06173 310 Gene3D - 8 47 - -
Seca8g06173 310 Gene3D - 162 245 - -
Seca8g06173 310 SMART c3hfinal6 170 197 IPR000571 GO:0046872
Seca8g06173 310 SMART c3hfinal6 216 243 IPR000571 GO:0046872
Seca8g06173 310 SMART c3hfinal6 9 36 IPR000571 GO:0046872
Seca8g06173 310 PANTHER PROTEIN PHOSPHATASE RELATED 10 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06173 Seca-Chr8 155739876 155743257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06173 12 43 C2H2 Transcription Factor Family AT3G02830 50.000 6.21e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca8g06173 zf-CCCH 3.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06173 - - ccaj:109816515 557.37