Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06172 ATGGAATTCGACGCCGCTATTCCCATGTCCCAAGCGGCCCTTACTCCAGATTCACTGTGGATGATGAAATTGAGGTCAAGTGAAACAATGGAATCTGGACCTTATCCTCAGCGTCCAGGGGAGCCAGATTGTTCATATTACATCAGAACAGGCCTTTGTAGATTTGGTGCAACATGTCGATTTAATCATCCTCCTAATAGGAAGCTGGCTATTGCCACTGCAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGCCAACCAGAATGTCAGGCATCAATCTTTATGGGGGTTATTATTGGATTTGGAGTTGACACTTTCATGGGTTCTCATAGCCATGACCTATACTATCTGAAGACTGGAACTTGCAAATTTGGAGCCACGTGCAAATTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGCTGCTTTAAATATTTTAGGCTATCCGCTCCGCCCTGTTAGTTTTTAA 474 0.4451 MEFDAAIPMSQAALTPDSLWMMKLRSSETMESGPYPQRPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMIGEFPERIGQPECQASIFMGVIIGFGVDTFMGSHSHDLYYLKTGTCKFGATCKFHHPRDKAGIAGRAALNILGYPLRPVSF. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06172 157 ProSiteProfiles Zinc finger C3H1-type profile. 115 135 IPR000571 GO:0046872
Seca8g06172 157 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Seca8g06172 157 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 115 134 IPR000571 GO:0046872
Seca8g06172 157 SMART c3hfinal6 112 134 IPR000571 GO:0046872
Seca8g06172 157 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Seca8g06172 157 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Seca8g06172 157 PANTHER PROTEIN PHOSPHATASE RELATED 25 154 - -
Seca8g06172 157 ProSiteProfiles Zinc finger C3H1-type profile. 38 66 IPR000571 GO:0046872
Seca8g06172 157 SUPERFAMILY CCCH zinc finger 115 136 IPR036855 GO:0046872
Seca8g06172 157 Gene3D - 36 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06172 Seca-Chr8 155736541 155739601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06172 35 64 C2H2 Transcription Factor Family AT3G02830 63.333 2.63e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca8g06172 zf-CCCH 1.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06172 - - adu:107485976 238.81