Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06170 ATGGAGAACTCAAAGAATAACGACACCAACAATGGAGAGTTTGCGGCCAAACGGAGAACTAATAACGGGGGAATCGATTTCGATTTGAATGAAGAGCCTCCTCCTTCTCCTATCCATATCATGCTCCCTAATTCTCACTCTCAGGTTTCTGCTGATGGTTGCCACATGGCGATGGGAGGGTTTATATACTTGGAGGAACCTAATCATGAATTTTCATTCTCCACTAAAGGAGATGCTACAAGAGATAGCAATGAATACAGTGATGCGAAAATGGTGAAGGATGCAACTATTGATGTTGGTAATAATAAGGGTAAGGGTAAGATGCCAATGTATTGTTCTGAGTCAGGAGAAAATGATGCAAATGTGAATGAGGTCTCCAATAATCCTCCTTTATCAACTGATGGTGGCAATTTCAAAACTCTGTCTTCGTCTGAGGTGGAGGTCGTTCCAGATCCTTCTTTTACACCTGCTAGCGAAAATTGCGATGATGAAGGTAACAGAGTTACTGAAGGAAACATATCACTTCAAGAGGAGAATAATGTTGTTGTTGATGCTGCTGATGAGGAATCTGGGTCTAAAAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGGAGAGCAAGCTTGTGAAATACAACAAGAGGCCGAGGAGGAAGCTAAGTGATGAAAGAGTAGTAGTCGAACTTGAGAGCCGAATGGACATACCGGATGATGGTTATCGCTGGCGTAAGTATGGACGCCAGATTATCAAAGGAGGTTACCTTAGGAGCTACTACAGGTGCTCGAATAATGGATGTAGTGTAAGGAAACAGATGGAAAGGGATTTAAGTAATTCAAGATATGTAAAAACAACATATGATGGAAGGCATAATCATGAAGTGCCAATTAGCAGCGCTAGAATCATTAACCGGCCACCCATAATTAAGCCAAAACCCCGAACTATTAGGGAAGAGATTGAAGCTGCCAATGCCATGGTCACTTTTGCAATACCACTTGGGACTGCAAGGCTGCCTAGGCCCACACCTCCTCCACTTTAA 1041 0.4304 MENSKNNDTNNGEFAAKRRTNNGGIDFDLNEEPPPSPIHIMLPNSHSQVSADGCHMAMGGFIYLEEPNHEFSFSTKGDATRDSNEYSDAKMVKDATIDVGNNKGKGKMPMYCSESGENDANVNEVSNNPPLSTDGGNFKTLSSSEVEVVPDPSFTPASENCDDEGNRVTEGNISLQEENNVVVDAADEESGSKRKRKRKRKRKRKRESKLVKYNKRPRRKLSDERVVVELESRMDIPDDGYRWRKYGRQIIKGGYLRSYYRCSNNGCSVRKQMERDLSNSRYVKTTYDGRHNHEVPISSARIINRPPIIKPKPRTIREEIEAANAMVTFAIPLGTARLPRPTPPPL. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06170 346 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 134 300 IPR044810 GO:0003700
Seca8g06170 346 MobiDBLite consensus disorder prediction 116 136 - -
Seca8g06170 346 MobiDBLite consensus disorder prediction 1 36 - -
Seca8g06170 346 MobiDBLite consensus disorder prediction 1 17 - -
Seca8g06170 346 SUPERFAMILY WRKY DNA-binding domain 232 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g06170 346 Pfam WRKY DNA -binding domain 238 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g06170 346 MobiDBLite consensus disorder prediction 194 209 - -
Seca8g06170 346 ProSiteProfiles WRKY domain profile. 232 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g06170 346 Gene3D WRKY domain 221 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g06170 346 SMART WRKY_cls 237 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g06170 346 MobiDBLite consensus disorder prediction 159 179 - -
Seca8g06170 346 MobiDBLite consensus disorder prediction 148 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06170 Seca-Chr8 155716143 155718212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06170 114 298 WRKY Transcription Factor Family AT5G56270 34.555 2.07e-24 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca8g06170 WRKY 2e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06170 K18835 - cave:132169035 128.642