Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06167 ATGAAGCACATGACTAGGCAAGAGTACGTAGCGTCATTGAGAAGGAAGAGCAGTGGGTTTTCTCGCGGTGCATCTATTTATCGTGGTGTAACGAGGCATCACCAACATGGTAGATGGCAAGCTAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACTTGGGAACTTTCAGCACCCAAGAAGAGGCTGCAGAGGCATATGATATTGCAGCCATCAAATTCCGAGGACTGAAAGCTGTAACAAACTTCGACATGAGCAGATACGACGTTAGGAGCATACTTGAGAGCAGCACATTACCCATTGGTGGTGCTGCAAAACGTTTGAAAGATGTTGACACCCTGGATATTGGTCAAAGTCAAACATCACAAGTACTGGATTCCACCATCATCACCACCTCCCATCTAAATTATGCACCACCTGCAACCCATCACCATGCTTGGCCTTCTCTTTCATTCCATCAACCTCAACCTTACTTGAATAATTATCCCTCTTATGGTGGGCAAAAGCTTTGGTGCAAACAAGAACAAGATTCTGATTTTTCTCAAACCTTTCAAGATATTCATCACCACCAACAACAACTCCAATTAGGAAACACCCACAATTTCTTTCACTCAAATTCTGGCTTGCAAGGTGTCATTAACATGGATTCTGCTGCTTCCATGGATAACAATAGCTATGATAATGGTAACAGCTACGTGATTCCCATGGCTACTACTACTACTACTTTCTTTGCGGATGATGGGAACCAAAATCATAGAAGCAATGGGTTTGATGATAATGATGTAAAGACACTTGGTTATGATAATGTGTTGAGCTCTAGTACTGATCCTTATCATGCAAGGAACTTGTATTATCTCTCTCAGCAAACATCTGCAGATGCATGCAATAATACTTGGGTGCCAACTGCTATTCCAACACTCCTACCAAGGTCTACCAATAATATGGCTTCATCACCCTTCACATTATTGCATGAATAG 978 0.4223 MKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLKAVTNFDMSRYDVRSILESSTLPIGGAAKRLKDVDTLDIGQSQTSQVLDSTIITTSHLNYAPPATHHHAWPSLSFHQPQPYLNNYPSYGGQKLWCKQEQDSDFSQTFQDIHHHQQQLQLGNTHNFFHSNSGLQGVINMDSAASMDNNSYDNGNSYVIPMATTTTTFFADDGNQNHRSNGFDDNDVKTLGYDNVLSSSTDPYHARNLYYLSQQTSADACNNTWVPTAIPTLLPRSTNNMASSPFTLLHE. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06167 325 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 182 - -
Seca8g06167 325 FunFam AP2-like ethylene-responsive transcription factor 25 86 - -
Seca8g06167 325 CDD AP2 25 86 IPR001471 GO:0003700|GO:0006355
Seca8g06167 325 SUPERFAMILY DNA-binding domain 25 86 IPR016177 GO:0003677
Seca8g06167 325 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
Seca8g06167 325 Gene3D AP2/ERF domain 26 86 IPR036955 GO:0003700|GO:0006355
Seca8g06167 325 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Seca8g06167 325 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Seca8g06167 325 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Seca8g06167 325 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06167 Seca-Chr8 155652827 155654651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06167 20 89 AP2-EREBP Transcription Factor Family AT5G17430 42.308 1.58e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca8g06167 AP2 1.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06167 K09285 - gmx:100797584 387.497