Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06165 ATGGAAACAAACTTGACTCTCAAAGTTGGTCTTAAATTCGATAATTTAGAAGACGCATGGCAATTTTGGGTGAATTATGGAGGCATAAAAGACTTTGGAGTTAGAAAACAATATTCAAGCAAGACTAAGAAAGATGGTTCTGTTACGTCTTACTTATATGTTTGTTGTAATGAGGGTGTACGGAAACCAGACTCAAGGGATTATAAAATGACCAATCCAAAACCCGAGACAAGAACAAGGTGTAAGGAAAGAATGAAAGTCAAACGATTCAATGAAAAATACAGAGTGATCAATTTTATTGATGATCACAATCACCCACTCCAACCACCAGAAACGATGCATATGTTAGCTCCTCAACAAAGAATAACTGAACATCAAGCATATGAACTTGAAGTGGCAGAAGATACAGGGATTCAACAGAAAGCCTCGTTTGATTTGATGAGTAAATATGTATGA 456 0.3596 METNLTLKVGLKFDNLEDAWQFWVNYGGIKDFGVRKQYSSKTKKDGSVTSYLYVCCNEGVRKPDSRDYKMTNPKPETRTRCKERMKVKRFNEKYRVINFIDDHNHPLQPPETMHMLAPQQRITEHQAYELEVAEDTGIQQKASFDLMSKYV. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06165 151 Pfam FAR1 DNA-binding domain 21 109 IPR004330 -
Seca8g06165 151 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 8 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06165 Seca-Chr8 155634632 155635087 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g06165 FAR1 1.5e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06165 - - vun:114184605 235.343