Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06156 ATGAGGTTACTGATGGGAACTGAGCTTATGAGAATTTGTGTTAAAGAAGATAATGATGATTTTCCATCAGTTCCACCAGGTTTTGAGTCATATACATCTTTTGCACTGAAGAGGGTAGAAGACAATGAGAAACAGAATGATAAAAATATGACCAGTTGTTCAGCCTCTACAAGTGCGTCTGAATCACAGTCAACTCAGGTGGAAAATGATGTTCAAGTTCGTGATACTACAAAGGTTGCTAGATCCCTTCGACGAAGACCATGGATTAACTATGGGCGGTATGAGAACAGTTCAGAGGAAGACTCTGATTGTGAGCGGCTTGATCAAAATTTCTCCTCAAGACCTTGTCTTCCTAAGGGAGTCATACGTGGATGTCCAGATTGCAATAATTGCCAAAAGGTTGTTGCCAGATGGCGACCAGAAGATGCTCTCAGGCCAAATCTTGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAACATTCGCGCCAGTGCTGAACCATATGGAATTTGTCGCATTGTTCCCCCATCTTCTTGGAAACCCCCTTGTCCTCTCAAGGAAAAAAGTATATGGGAGGGCTCTAAATTTGCTACTCGTGTTCAGAGGATTGACAAACTTCAGAATCGTGCTTCAGGTAGAAAGATGTCAAGGATTCAAAGTAATATGAAAAGGAAAAGGAAAAGGTGCACAAAAATGGGAGTGGATAATGGCACTAGAACAGGACCTAATGTGATATTTTCTGAAGCTGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAGATATGCAGATGATTTTAAGGTCAAATACTTCAGAAATGAGAATGTATCTCATTTGAGTGCTAATACAACAATTTTAAATGGAACCTCGGAACCTTCTGTGGAGAACATTGAGGGTGAATATTGGCGGATGGTCGAGAATCCAACTGAAGAAATTGAGGTGCTTTACGGAGCTGATCTGGAAACTGGGGTTTTTGGGAGTGGTTTTCCTAGCAAGTTTAGTCATGTCGGTTCTGCTTCACATGAACAGTACATAAAATCTGGCTGGAATTTAAATAATTTTGCAAGGCTGCCTGGATCTCTGCTGTCTCATGAAACCAGTGATATATCTGGTGTTCTAGTGCCATGGTTGTATATAGGAATGTGCTTTTCCTCTTTTTGTTGGCACGTGGAAGATCACCATTTATATTCATTGAATTATATGCATTGGGGTGCTCCAAAAATGTGGTATGGTGTCCCTGGAAAAGATGCTTGCAAATTGGAAGAGGCAATGAGAAAGCATTTACCAGAACTTTTTGAAGAACAGCCTGACTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCCTCTATTCTTAAGTCTAAAGGAGTACCAGTCTATAGGTGTGTCCAAAACCCTGGGGAATTTGTTTTGACATTTCCTCGAGCCTACCACTCTGGATTCAATTGCGGCTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATAGAGCTGTACCGGGAGCAGGGGCGCAAGACTTCCATATCCCATGATAAGCTGTTGCTTGGGGCTGCTAGGGAAGCTGTACGAGCCCAATGGGAGCTTAATTTGCTGAAGAAAAATACTACTGGTAATCTTCAATGGAAAGATGTTTGTGGAAAGGACGGTCTTCTGGCAAAAGCACTCAAGACACGTGTTGACATGGAGCGAGTAAGGAGGGAATTTCTCTGCAGTTCTTTACAGGCATTAAAAATGGAGAGTAGTTTTGACGCTACAAGTGAAAGAGAATGCAACATTTGCTTTTTTGATTTACACCTATCTGCTGCTGGTTGTCGCTGTTCCCCAGATAGATATGCTTGCTTGGATCATGCGAAGCAATTTTGTTCATGCTCTTGGGATTCCAAATTTTTCCTCTTTCGTTATGATATTAGTGAACTAAATATTCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAATATACAGATGGGCAAAATTAGATCTTGGGCTGGCACTAACATCTTATGTCTCAGCAGATAAGGAAAAGGTACTTAAGGAGTTGAGATTGCATTCATCCAACTTGTCTCATTCTTCCAGGGCCAATGTGAGTAAAGAGATGGTTTTGCATACATCAAATAAATTTATTGAAGATTCTCAGTTAATAGATGTTCCAATAGAGGATCAAGCAAATTCAACAAATAGCGAAGATATAAGCTATCTTCAACAAAGGAAATCAACAGAAGCTGTGTCTCCTTTGAATCACATGAAGGAATTGTTAACATTCAATAGCTCAAAGCCTACATTGGAGATAGCTAATCACAAGATCTGTGTTAATAAAGAAGAATCTGTTATTTGCAGATCAAAGCTGAGAACATCTGGTTGTCAATTGTCTCAAGAGGATTCATCATATGCTTTATCTCAGCCTCTAGCTCAGCGTGGAGGTGAGAAAAGTTCACTTAACAGACATAACGATATTATACTTCTTAGTGATGATGATGATGAAAAGAAGATGCCAGATTCAAATAGAAGGAAGGAACTTTCTGATATGCTTGCAGGTTCTAGAAATAAAGCAAGCCCATTTAACAATATAGAAAATAACTTGAACCTCACTGTGACAGATGCTGCCGTGATGGGTAAAAAGGACGCTATTACATTGCCTCGTGAAGATAACAGTTTGGATTCAACTCAGCTTTTGCATGTGAAACAAGAATGTCATGAACAAAGAGGACCAGTTCAAGCTTCTACACCAGTAGATCTTTCTTTTCATATAGGTCTTACTAGTGCAGAATCAGTAAGAAATATTCCAGCTTCTTCAACAGTAGAGACCAGCGATCATCGTTCGGAAAGTTTAGATATTTGTCCTCTGAACCCACAGCATTCTGGAACTATCAAGGTTAAGATTGAGGATAATCATGAAAAGTTTGGAGGATGTACCACTTCAAATGTAGCGGACGGTGCAAGAGCTGTTAATGGAAACATCTCTTGCAGTCTAAATAATTACCGTCACAAAGGTCCTCGTATTGCAAAGGTTGTGCGGCGTATCAACTGCAATGTTGAACCTTTGGAATTTGGAGTTGTGCTTTCTGGAAAATCATGGTGCAGCAGTCAGGCTATATATCCAAAGGGTTTTAGAAGCCGTGTTAGATACATAAATGTCTTAGATCCATCCAGTATGTGTTACTATATTTCAGAAATTCTTGATGCTGGACGTGGTTGGCCTCTATTTATGGTTTCCTTGGAAAATTGTCCAAATGAGGTCTTCATTCATAAGTCAGCTACAAGATGCTGGGAGCTGGTAAGGGAGAAAGTGAATCAAGAGATCGCAAAGCAACATAAGCTGGGAAGAAAGGGTCTTCCTCCTTTACAACCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGCAATAGTGCAGGCTATCGAGGCACTGGATCAAAGTCGAGTTTGTAATGAATATTGGGACTCCCGGCCATACTCCCGGCCTCAAGGGCAGATTTCACAAGCTTACCAACAAACCAATGTAAATGGTGGAAATGGTCAAGGGGCTCTCATGAATCAGCACACGCCCGTTGGGGTTGTTGCAGTACTAAGGAGCCTATTTAAAAAGGTCAATGCAGAAGAATTGAAGTCATTGTACAGCATTCTTAGTGACAATAAGCTAGCGGCTGACCGGATCCTAATTGCGCAACTTCTCAATGAAGAGATTCACAAATCCCAACCGCCCTAG 3792 0.4103 MRLLMGTELMRICVKEDNDDFPSVPPGFESYTSFALKRVEDNEKQNDKNMTSCSASTSASESQSTQVENDVQVRDTTKVARSLRRRPWINYGRYENSSEEDSDCERLDQNFSSRPCLPKGVIRGCPDCNNCQKVVARWRPEDALRPNLEDAPVFYPTEEEFQDTLKYISNIRASAEPYGICRIVPPSSWKPPCPLKEKSIWEGSKFATRVQRIDKLQNRASGRKMSRIQSNMKRKRKRCTKMGVDNGTRTGPNVIFSEAERFGFEPGPEFTLETFQRYADDFKVKYFRNENVSHLSANTTILNGTSEPSVENIEGEYWRMVENPTEEIEVLYGADLETGVFGSGFPSKFSHVGSASHEQYIKSGWNLNNFARLPGSLLSHETSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYREQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTTGNLQWKDVCGKDGLLAKALKTRVDMERVRREFLCSSLQALKMESSFDATSERECNICFFDLHLSAAGCRCSPDRYACLDHAKQFCSCSWDSKFFLFRYDISELNILVEALEGKLSAIYRWAKLDLGLALTSYVSADKEKVLKELRLHSSNLSHSSRANVSKEMVLHTSNKFIEDSQLIDVPIEDQANSTNSEDISYLQQRKSTEAVSPLNHMKELLTFNSSKPTLEIANHKICVNKEESVICRSKLRTSGCQLSQEDSSYALSQPLAQRGGEKSSLNRHNDIILLSDDDDEKKMPDSNRRKELSDMLAGSRNKASPFNNIENNLNLTVTDAAVMGKKDAITLPREDNSLDSTQLLHVKQECHEQRGPVQASTPVDLSFHIGLTSAESVRNIPASSTVETSDHRSESLDICPLNPQHSGTIKVKIEDNHEKFGGCTTSNVADGARAVNGNISCSLNNYRHKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIYPKGFRSRVRYINVLDPSSMCYYISEILDAGRGWPLFMVSLENCPNEVFIHKSATRCWELVREKVNQEIAKQHKLGRKGLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDQSRVCNEYWDSRPYSRPQGQISQAYQQTNVNGGNGQGALMNQHTPVGVVAVLRSLFKKVNAEELKSLYSILSDNKLAADRILIAQLLNEEIHKSQPP. 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06156 1263 SMART fyrc_3 1092 1186 IPR003889 GO:0005634
Seca8g06156 1263 Pfam JmjC domain, hydroxylase 392 508 IPR003347 -
Seca8g06156 1263 PANTHER LYSINE-SPECIFIC DEMETHYLASE 146 1137 - -
Seca8g06156 1263 ProSiteProfiles FYR domain FYRC motif profile. 1088 1178 IPR003889 GO:0005634
Seca8g06156 1263 MobiDBLite consensus disorder prediction 843 868 - -
Seca8g06156 1263 Pfam jmjN domain 152 185 IPR003349 -
Seca8g06156 1263 SUPERFAMILY Clavaminate synthase-like 330 552 - -
Seca8g06156 1263 ProSiteProfiles JmjN domain profile. 151 192 IPR003349 -
Seca8g06156 1263 MobiDBLite consensus disorder prediction 826 872 - -
Seca8g06156 1263 MobiDBLite consensus disorder prediction 219 244 - -
Seca8g06156 1263 MobiDBLite consensus disorder prediction 48 73 - -
Seca8g06156 1263 Gene3D Cupin 136 509 - -
Seca8g06156 1263 MobiDBLite consensus disorder prediction 43 74 - -
Seca8g06156 1263 ProSiteProfiles JmjC domain profile. 362 525 IPR003347 -
Seca8g06156 1263 SMART fyrn_3 1042 1086 IPR003888 GO:0005634
Seca8g06156 1263 SMART JmjN_1 150 191 IPR003349 -
Seca8g06156 1263 FunFam Putative lysine-specific demethylase JMJ16 1034 1172 - -
Seca8g06156 1263 Pfam C5HC2 zinc finger 615 665 IPR004198 -
Seca8g06156 1263 ProSiteProfiles FYR domain FYRN motif profile. 1028 1086 IPR003888 GO:0005634
Seca8g06156 1263 Pfam F/Y rich C-terminus 1091 1174 IPR003889 GO:0005634
Seca8g06156 1263 Gene3D - 1035 1172 - -
Seca8g06156 1263 SMART cupin_9 362 525 IPR003347 -
Seca8g06156 1263 Pfam F/Y-rich N-terminus 1041 1083 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06156 Seca-Chr8 155497175 155507781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06156 5 1258 JUMONJI Transcription Factor Family AT1G08620 55.105 0.0 1271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca8g06156 JmjC 1.5e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06156 K11446 - gmx:100800271 2172.51