Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06146 ATGAAAGGGCGATCCCACCGCCCTCAGAGTACGGACCCACCGGACGATTGGGTCGACGGTTCATGGACCGTCGACTGCATTTGCGGCGTGACCTTCGACGACGGCGAAGAGATGGTTAAATGCGACGAGTGCGGCGTTTGGGTTCACACGCGCTGCTCTCGTTATGTCAAGGGAGACGACATGTTCGCCTGCGACAAGTGCAAGAACAAGACCAACGGCCGAGCCGACAACAACACCGAGGAAACCGAGGTTGCTCAATTGCTGGTTGAGCTCCCAACAAAAACCATTTCTTTGGAGAACAACAACAATTCTTTCGCGTCCAAAGTTGCCGCTCGTTCTCGCCGCCCTTTCAAGCTTTGGACCGATATACCCATGGAGGAGAGGGTTCACGTTCAGGGTATCCCTGGTGGTGATCCTTCTCTCTTTGCTGGAAGGACTGTGCCCTCGATTTTCAGTCCCCAATTGTGGAAATGCACCGGTTATGTTCCCAAGAAGTTTAATTTTCAGTACAGGGAGTTTCCCTCTTGGCATGAGAAAGAGGGTGCAGCACAAGAGAATGATAATGGGGCTGGGGTTCTTTTCTCCTTTTCTAAAGAAACCAGTGCTACTGCTGTCTTGGCTTCCCCTGTTGCTGCTCTGGTTGATATGAGATCTAGCCACGGCCGTGAAGGCAAGACGGGTTTCAAGGATATGGGGATGAACAAGTTTGGCGGGGAAGAGGGGACACGTGTCCATAGTGCGATAAAGAAGGAGAGGAGTTTGCTGAGGCCTCTTGTTGTTCATTCCAGTAAGCGCAGGAAAGAGGACTTGGGGAATTCCAATTCCAAAGACCGGGGTGGGAAGAAGCGGGTTAAGATCTCTTCTGACAAAGAGGTAGATCCCAAGAGGAGGAGTTCACATTCTTCTAAACCAGCGTTTACACCCACCAGTGATGCAAAACAGTTGGAATTTTATGAAGACAGAGGTTCGAAGATTTTCAAGGCTGACACTCGGAGCATAAAGAATAAAAACTTAAAGGACATAGTGGTTCAAGAACATGTTTCTAATGATTATTTTGCTGTGGATACCATCGCGGAGGAGCCAAATAACAACTTGACAACTACTGAGGAGTCTTCAGAAGCCTTATATCCTAACATAACAAGACACAGTCTTTCTGTTGGTGATGTATTAGCAGATGAGAAGACTGGCCATAAACTTGTTGAAATGTCTTCTAAGACTGATGATGCTGTTACATCAATTCTAAAACATAATAAAGTTGGAAATGCTTCAGTTAAAGAAAAGCTTGTAATCTTGCCTAAATATGTGATACTTAAAATTTCAGCTCGGGAGCCTTCAGACTTCGTCTCACACTATATTGTGATGACATTTCTTGCTTCTACAAACAAGGACGGAGATTGCTTGGCTGCTGATAATGTGGATGATACTTTAGTAGTAAGAAGCACTGTGAGTCCTCAGACGGAAGATCATTGTGGTTCTGCACCAGAACTGAAGGATAACCAAGCATCTCAAGATCTTGACTGTAATCTGCGTCCTAGCTCTGCAAAATGCAAAGTTAAGGTGAAGAAAGAAGATGATGATGATAATTTTAAGAAGCTCTCCAATTTTCATTCTTCACCTATCAGTGATCTTAAAAACAATGAAAAGCCATCTGATCATGCATCTGATATTGTTAAAGTGAATGATGTTGTGGTTCCCAGTTTATCATCACGTGAAAATAAAATGGGCGATGTTGACATATCATCAGAAGTAGTCCTTGATGATCATACCAATAAACCTGATGAATTATTATCTGGTAATTTTTGTCATGGAAAACAAGAAGTGGAGGGGTCTGAAGGTTCATTGGAAACACAAAAGGGGTTTTCAGAAACAAAAGATGGTTCGGATTCTGCTAAGGATCCATCAAAATCTGAAGCACCTGGATGTCCTCATAAGATGCTAGCATGTGTTGGAAAGTCATCTCCAACTTCATCAACCATGAACTCCAAATCATTGAGTCATGACTTAAAATCTGAAGATACTGAAATCCCTAATTCTTTTACAAAGCATGGACTGTTGTCTGATTGTAACATTATAAAGAATGAAAGTTGTCCGAGTGATGTTGCAAAGGATGAAATTCCAAGGAAGTCTGTAAGAGACCGACCCAAATCTTCGAATTCCAATTCAAAAGGATTACATTCAAGCAGGAGTGCGCAAATTTCTGTTTCAAAGCAAGTAAATTCAGATGCTAGAGATTCTGTTCCTTGTTCGTCATCTAAAGTGTCTCTGGCACATCAGACTGCAAGTACTTTAGGCGCTAGTGAGACTAATGCATCACTGCATCACCAGAAGGCTTTACAAATGCAGAATAAGGTTACATCTTCAGTGCCACAGAAAGTTGAAAAGCTTAACCAAACAAGCACCCATCCTTCCTCTAAGTTGAACCAGAGTAACGTGCCAACAGTGAATCCTTCTCCAACATCAAATTCTTCAATGCTGAGTGATGAAGAGCTTGCTTTGCTATTGCATCAAGAACTGAATAGTTCACCTCGTGTACCTCGGGTACCCCGTGCACGCCATGCAGGTAGCTTGCCACAGTTAACTTCTGCTAGTGCTACAAGCATGCTAATGAAGCGAACAACGTCGGTTGGAGGAAAGGATCACTATTTGGTGTCTAGACGAAAGTACAAGGATGCATCTAGAGATGGGTTTGGCAGTTCTCGTGAGCCTGAAGATGAAGCTAAAAAGATAGAGAAGGAGAAGGGTCCATCCACATCTGATCAGAGAAAACAAGATATGGCGTATGTAGAAGATGCTGCTGCAAAGGAAGAAGGAGAGCGTGCATCTGTGACGGCTGCAATCACAAACAATGTTGTTTCTGCCACCTCTGCCATTGCAAACAGCAGTCCTTCCTCTCCTCCTGATGATCAGAATCTGTCATCAATACGGAACTCACCCAGGAATATATCTGATGATGATACAGCAACTGCTGGAAGGCCAGTTCATCACACCTTACCTGGCTTAATCAATGATATTATGAGCAAGGGCAGGCGTATGACATATGAGGAACTCTGTAATGCTGTGCTACCGCACTGGCACAACTTGAGGAAGCATAATGGAGAGCGTTATGCATACTCGAGTCACTCTCAGGCTGTTCTTGATTGTTTGAGGAATCGGAATGAATGGGCAAGGTTGGTTGATCGTGGTCCAAAGACAAATTCTAATAGGAAAAGGCGTAAGCTGGATGCTGATGAATCTGATGATAATGGATATGGCAAGGGAAGAAATGCAAAAGAGGCTGATGGGAAGAACTTTGAGCTGCAAAAAGAAGAGTTCCCTAAAGGCAAGCGTAAAGCTCGAAAACGCAGGCGGCTTGCTCTTCAGGGAAGAGCAGTAAAGGATGTCAGGAGGAGACAAAAAGCTGACTCGTCAACTGATGAGGATGTTGGTCCGTTCTCCAATTCTAGTGAAGAAAGCATGTTTAGCGAGGATGAAATTCAAGCTGGCAGAATATGTGCAGCAGGAAGTACATCTGATGAGGCAGGTAGTGCCTAA 3531 0.4404 MKGRSHRPQSTDPPDDWVDGSWTVDCICGVTFDDGEEMVKCDECGVWVHTRCSRYVKGDDMFACDKCKNKTNGRADNNTEETEVAQLLVELPTKTISLENNNNSFASKVAARSRRPFKLWTDIPMEERVHVQGIPGGDPSLFAGRTVPSIFSPQLWKCTGYVPKKFNFQYREFPSWHEKEGAAQENDNGAGVLFSFSKETSATAVLASPVAALVDMRSSHGREGKTGFKDMGMNKFGGEEGTRVHSAIKKERSLLRPLVVHSSKRRKEDLGNSNSKDRGGKKRVKISSDKEVDPKRRSSHSSKPAFTPTSDAKQLEFYEDRGSKIFKADTRSIKNKNLKDIVVQEHVSNDYFAVDTIAEEPNNNLTTTEESSEALYPNITRHSLSVGDVLADEKTGHKLVEMSSKTDDAVTSILKHNKVGNASVKEKLVILPKYVILKISAREPSDFVSHYIVMTFLASTNKDGDCLAADNVDDTLVVRSTVSPQTEDHCGSAPELKDNQASQDLDCNLRPSSAKCKVKVKKEDDDDNFKKLSNFHSSPISDLKNNEKPSDHASDIVKVNDVVVPSLSSRENKMGDVDISSEVVLDDHTNKPDELLSGNFCHGKQEVEGSEGSLETQKGFSETKDGSDSAKDPSKSEAPGCPHKMLACVGKSSPTSSTMNSKSLSHDLKSEDTEIPNSFTKHGLLSDCNIIKNESCPSDVAKDEIPRKSVRDRPKSSNSNSKGLHSSRSAQISVSKQVNSDARDSVPCSSSKVSLAHQTASTLGASETNASLHHQKALQMQNKVTSSVPQKVEKLNQTSTHPSSKLNQSNVPTVNPSPTSNSSMLSDEELALLLHQELNSSPRVPRVPRARHAGSLPQLTSASATSMLMKRTTSVGGKDHYLVSRRKYKDASRDGFGSSREPEDEAKKIEKEKGPSTSDQRKQDMAYVEDAAAKEEGERASVTAAITNNVVSATSAIANSSPSSPPDDQNLSSIRNSPRNISDDDTATAGRPVHHTLPGLINDIMSKGRRMTYEELCNAVLPHWHNLRKHNGERYAYSSHSQAVLDCLRNRNEWARLVDRGPKTNSNRKRRKLDADESDDNGYGKGRNAKEADGKNFELQKEEFPKGKRKARKRRRLALQGRAVKDVRRRQKADSSTDEDVGPFSNSSEESMFSEDEIQAGRICAAGSTSDEAGSA. 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06146 1176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 75 IPR013083 -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 1120 1137 - -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 255 314 - -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 841 924 - -
Seca8g06146 1176 SMART PHD_3 25 68 IPR001965 -
Seca8g06146 1176 SUPERFAMILY FYVE/PHD zinc finger 14 72 IPR011011 -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 697 715 - -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 956 994 - -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 1058 1154 - -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 956 984 - -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 219 239 - -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 696 750 - -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 255 300 - -
Seca8g06146 1176 PANTHER UNCHARACTERIZED 1 1168 - -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 650 664 - -
Seca8g06146 1176 ProSitePatterns Zinc finger PHD-type signature. 26 67 IPR019786 -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 716 750 - -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 856 872 - -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 589 681 - -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 880 924 - -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 1138 1154 - -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 795 823 - -
Seca8g06146 1176 MobiDBLite consensus disorder prediction 1058 1106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06146 Seca-Chr8 155404628 155413174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06146 24 67 PHD Transcription Factor Family AT5G22260 44.681 2.44e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06146 - - gmx:100810855 1570.44