Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06129 ATGGCAATGGCAATGACAATGCCTCTTACTCTAAGGAATAAGCTCAAGACTCTTTGTTCTTGTGGAGATGGCTGGTCTTATGCCATTTTCTGGCGTTTTCATCCCCGGAATTCCCTGTTGTTGACTGTGGAAGAAGCATACTATGAAGAGCAATTGGGAGAAGAGATTGTCAACTTGCTTCCACAGGTGCAATTGCTAGGTGAAGGAATTGTTGGTGAAGCTGCTTTCACGGGCAAGCACAGTTGGGTGCACTCAGATAGTCAAATCCAAGAATGGAATTTGACTGGGCAGAATATTCGTGAGAATGATTCTGGATTGCTTCAACAATTCTCCTCTGGGATAAAGACAATTGTGGTCATACCTGTCAAAGCATGGGGAGTGGTGCAATTTGGATCTAAAGTGAAGATTTTGGAGAGTGTGGATTTTTTGGAGCAAACACAAGGCTTGCTTATGGAGATAGATGATACAAATATGCCTGACATGTCAGGAAATTCAGTTTTATCTTTGAACTGTGAAGATTATGATCTAAATGGGTTGTTGGCTTCCATTTCTTCCGAAAATTCAGATGATTGGAATCTCAAATATGCTCATGATGAACACTCTAAAGAGCTCAGAAAAGTTTTTTCTTCTGAAAGTTTCAATGATCCTTTCCCTTCTCAATATGAGACTTATGAAGAAGGGGTGACTTCATTTCAAGGAGATTCTTCTTGTCTGGGTGACCTATTGAAAGATCCCATAGAAGCTCAAACTGTTTTATCAGATAGGGAGAGTACTGATGTGCTTTTGAAGCCTAACTCTTCTATAAGCAGCTTAATTGCCAACAACCACTGTTTTGGTGCATGGAGTGGTGAAGTATCTTCTTTTGATTTGTTGGGGCAACAATTGGTATCTGAAGTATCTTCAACATTAACCTCATTGCACAGTATGAACACAGGGTCATTTCAAGACAAATTACAAAATTCACTGGATAACCAACATTCTTCTCAATCCAGTGTTGTGACAGATGTTAATTTCCCCCCGAATTCAAATACACTACATGGACTCTTTGAGAGCTTAGAGCCAGTTGATATGTCAGAAGAATTTTTGAAGTTCAGCTCCATGGATGATCTTTGCCAATGGTTTGCTCCTTCTCCAGAGGATAGTATCTGCAGAACAATAAGTGCATTGGATAATACCTTTTCTGAATCAATAGAATTTAATCTTGCTTCTTCTGATTTGGTTGGAAGCAGTTCTTTAAGTGATATTCCAGTGACATGCCTAGCTGGGGATAATGTCATCACCAATGCTCTCAAATCAGATGGGAAAGAAACATCTGTAGCTGTGCATAGCTCTGAAAACGGTCTCTTGGATAGCATGGAACTTGATTTGACCTGTGATCAAGTTAATGAATGGTTGGGGAATATACTTACACCAGTGATGAATGCTGCTACTGATACTGATACTGGCTTTTCTGAATGCCCATCAGAGCTGAATATTGGTACACTAACTGGCACCAGGAAAAGACTATTCTCAGAGTTAGGAATTGAAGAGCTTTTGAGGGGTGAAACAAATTATAACCCTTTCAATAGTTCTGATTTTGAGCATGTGTTATCATCCAATAAGAGGCAAATGGTAGAGTTTTCACCAATGAATAGAAATAGAAGTCCAATACATTTTGCAAACCTTGCAAGGCCTGAGGCTAGAGCAGACTTGATGCAGCCTGTTTCTGACTTGGACAAGTCAAACACTCTTTTAAGCAAGAAAGATACATTCCCAAAATTCCAAGTAGGCATGTTGATTGATGATAGGCATAGCATTAATATTGGGAAGGCTGTTCCAGCACACCCTCAAAAGCTAGAGGAGCCCACAAAGCCCACCAAGAAGAGGGCTAGGCCAGGGGAGAGTACTAGACCACGACCAAAAGATCGCCAGCAGATCCAAGACTGTATTAAGGAGTTGAGAGGAATCATCCCCAATGGTGGAAAGTGCAGCATTGATTCTTTGTTAGACCGCACCATCAAATACATGCTTTTCTTACGAAGTGTTGTCAAGTATGCAGACAAGCTAAAGGAACCTAATGAGCCAAAGCTCATTGACCAGGAAAATGGAGTGGTTTTAAAAGACAATAGAGTGGGAGATAACAAAAACTGTGGTGTTACATGGGCATTTGAAGTGGCACAACAAACAACTGTGTGCCCAATTATAGTTGAGGACATGAGCACACCTGGCCAAATGCTTATAGAGATGCTTTGTGAGGAGCAGGGTTTCTTCCTTGAGATAGTTGACATAATTCGCGGTTTTGGGCTGAATATCTTGAAAGCAAAGATGGAATTAAGGAAGAACAAACTATGGTCACGCTTTATTGTTGAGGCCAACAGACATGTGACAAGGATAGATGTATTTTGGTCCCTTATCCATCTTCTGCAGCAAACAAACGCCTCCGGAGTTGATTCTGCTAATAAGCAGTGCAATGTTATTGATGCCAATATCTCTTGA 2475 0.4069 MAMAMTMPLTLRNKLKTLCSCGDGWSYAIFWRFHPRNSLLLTVEEAYYEEQLGEEIVNLLPQVQLLGEGIVGEAAFTGKHSWVHSDSQIQEWNLTGQNIRENDSGLLQQFSSGIKTIVVIPVKAWGVVQFGSKVKILESVDFLEQTQGLLMEIDDTNMPDMSGNSVLSLNCEDYDLNGLLASISSENSDDWNLKYAHDEHSKELRKVFSSESFNDPFPSQYETYEEGVTSFQGDSSCLGDLLKDPIEAQTVLSDRESTDVLLKPNSSISSLIANNHCFGAWSGEVSSFDLLGQQLVSEVSSTLTSLHSMNTGSFQDKLQNSLDNQHSSQSSVVTDVNFPPNSNTLHGLFESLEPVDMSEEFLKFSSMDDLCQWFAPSPEDSICRTISALDNTFSESIEFNLASSDLVGSSSLSDIPVTCLAGDNVITNALKSDGKETSVAVHSSENGLLDSMELDLTCDQVNEWLGNILTPVMNAATDTDTGFSECPSELNIGTLTGTRKRLFSELGIEELLRGETNYNPFNSSDFEHVLSSNKRQMVEFSPMNRNRSPIHFANLARPEARADLMQPVSDLDKSNTLLSKKDTFPKFQVGMLIDDRHSINIGKAVPAHPQKLEEPTKPTKKRARPGESTRPRPKDRQQIQDCIKELRGIIPNGGKCSIDSLLDRTIKYMLFLRSVVKYADKLKEPNEPKLIDQENGVVLKDNRVGDNKNCGVTWAFEVAQQTTVCPIIVEDMSTPGQMLIEMLCEEQGFFLEIVDIIRGFGLNILKAKMELRKNKLWSRFIVEANRHVTRIDVFWSLIHLLQQTNASGVDSANKQCNVIDANIS. 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06129 824 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 623 672 IPR011598 GO:0046983
Seca8g06129 824 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 61 147 IPR025610 -
Seca8g06129 824 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 7 815 IPR043561 GO:0003700|GO:0006355
Seca8g06129 824 MobiDBLite consensus disorder prediction 603 638 - -
Seca8g06129 824 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 636 679 IPR036638 GO:0046983
Seca8g06129 824 MobiDBLite consensus disorder prediction 613 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06129 Seca-Chr8 155228122 155233279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06129 614 811 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 53.000 1.71e-62 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06129 - - gmx:100798158 1087.02