Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06122 ATGGCAACCCGAAGATATGCGTTTGGAAGGTTGGATGAGGCTAACCATCCAGACTCCATGAGAGCCACCTTAGCTGAATTTGTCTCCACTTGCATCTTTGTCTTTGCTGGAGAAGGCTCTGCCCTTGCTCTGCGCAAGATTTACATGGAGCCAGGTGCATCAGCAGGTGAGCTAGTGGTAATTGCACTAGCTCATGCTTTTGCTCTTTTTGCTGCTATATCTGCTAGCATGCATGTATCAGGTGGCCATGTCAACCCTGCTGTCACTTTTGGTGCTCTTCTTGGTGGAAGGATCTCTGTTCTCAGAGCTGTCTACTATTGGATTGCTCAACTTCTCGGTTCTATAGTGGCTGCTCTCTTGTTGAGGCTTGTTAGTAACAACATGAGACCACAGGGGTTCAGTGTGACATTCGGTCTTGGTGCATTACACGGACTTATACTTGAGATTGCCATGACATTTGGTCTGATGTATACTGTGTATGCTACTGCTATTGATCCCAAAAGGGGTACCATTGGAACAATTGCACCCTTAGCCATTGGACTCATTGTTGGGGCAAACATCCTCGTTGGTGGGCCGTTTGATGGAGCATGCATGAACCCTGCTCGGGCTTTTGGGCCTGCCGTGGTGGGCTGGAGATGGCACTACCACTGGATCTTTTGGGTGGGTCCATTGATTGGGGCTGCCCTGGCAGCACTCATATATGAATACATTATGGTCCCAATTGAGCCTCCTCATACTCATCAACCTTTGGCTCCTGAAGATTACTAG 768 0.4857 MATRRYAFGRLDEANHPDSMRATLAEFVSTCIFVFAGEGSALALRKIYMEPGASAGELVVIALAHAFALFAAISASMHVSGGHVNPAVTFGALLGGRISVLRAVYYWIAQLLGSIVAALLLRLVSNNMRPQGFSVTFGLGALHGLILEIAMTFGLMYTVYATAIDPKRGTIGTIAPLAIGLIVGANILVGGPFDGACMNPARAFGPAVVGWRWHYHWIFWVGPLIGAALAALIYEYIMVPIEPPHTHQPLAPEDY. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06122 255 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g06122 255 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g06122 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Seca8g06122 255 FunFam Probable aquaporin TIP1-1 4 253 - -
Seca8g06122 255 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g06122 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g06122 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g06122 255 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g06122 255 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g06122 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g06122 255 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g06122 255 PANTHER AQUAPORIN-8 6 248 IPR034294 -
Seca8g06122 255 Gene3D Glycerol uptake facilitator protein. 4 242 IPR023271 -
Seca8g06122 255 SUPERFAMILY Aquaporin-like 14 245 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06122 Seca-Chr8 155131520 155132626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06122 2 255 Major Intrinsic Protein MIP AT1G73190 70.076 1.03e-123 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06122 K09873 - gmx:100814469 443.351