Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06105 ATGGAGATCATGGAAGCAAGCAAAGCAGCAGGGTTGAGCCCTCTGAGTGAGAGCATTTGGAGGGAAAAAACAAACACAGAATTAATTGGAGATGTGTCAGCAAGGCTGACATGGAAGGATCTAACTGTGATGGTAACTCTGAGCAATGGAGAGAGCCAGAACGTTTTGGAGGGTCTAACTGGGTATGCTGAACCTGGAACCTTCACGGCTCTAATGGGTCCCTCTGGTTCAGGAAAATCTACCCTGCTTGATGCTCTGTCTAGTCGTCTAGCTGCAAATGCCTTCCTCTCAGGCACCATCCTCCTCAATGGTCGCAAAGCCAAGCTCTCCTTTGGCACAGCAGCTTATGTGACACAAGATGACAACTTGATTGGTACACTAACGGTGCGAGAAACAATTTGTTATTCAGCTCATTTGCGTCTGCCTGATAAGATGGCATGGTCAGATAAACGAGCTCTGGTTGAGAGCACCATTGTAGCGATGGGTCTTCAGGACTGTGCTGATACAGCGATTGGAAACTGGCATTTGCGTGGTATAAGTGGAGGAGAGAAGAGAAGGGTTAGCATTGCCTTGGAGATCTTGACGAGGCCTAGATTACTTTTCCTTGATGAGCCAACTAGTGGACTTGACAGTGCTTCGGCTTTCTTTGTGACTCAGACATTAAGAGCCCTGGCAAGGGATGGGCGAACTGTGATAGCTTCTATTCATCAGCCTAACAGTGAAGTGTTCGAACTATTTGATCAATTGTACTTGCTTTCTGGTGGCAAAACTGTTTATTTTGGCAAGGCTTCCGAAGCATATGAGGCAATAATTAAGCTCATTATCCATCCACTTCTTCCTTTTTCTCTAATTTCCTTAAAAATTTCTGTTATTGTAAAGAAATTAAATGGAGTATTTTTTATAATTACAAGTGTAATATGTCTGCAGTTCTTTGCACAAGCTGGATTTCCATGCCCTGCTTTGAGAAACCCATCAGATCATTTTCTTAGGTGCATCAATTGTGACTTTGACAAAGTCAAGGCCACTCTTAGCGGGTCCATGAAACTGAGGTCTGAGGGAAGTGATGATCCCCTGGACAAGATCACTACTGCTGAAGCTATCAGAACTCTTACAGACTACTACCGAACTTCTCAGTATTCTTATGCTGCAATACAGAAAGTGGATGAGATATCCAAAGTTAAGGGAACAGTGCTTGATGCAGGAGGAAGTCAAGCTAGTTTTTTAATGCAATCTTACACCTTAACCAAGCGCTCATTTACCAACATGTCAAGGGATTTTGGGTACTATTGGCTTAGGCTTGTAATCTATATTGTAGTCACAATCTGCATTGGAACCATTTATTTGAACGTGGGGACGGGCTACAACTCAATTCTGGCAAGGGGTTCATGTGCATCTTTTGTCTTTGGTTTTGTCACTTTCATGTCAATTGGTGGGTTCCCTTCATTTGTTGAAGACATGAAGGTTTTCCAAAGAGAGAGGCTTAATGGCCACTATGGTGTCACGGCATTTGTCATCAGCAACACATTATCTGCAACTCCCTTCCTAATATTGATCACCTTTCTCTCAGGAACTATTTGTTACTTCATGGTTGGCCTACATCCTGGCTTTAGGCACTATCTGTTCTTTGTCTTGTGCCTATATGCCAGCGTTACAGTGGTTGAAAGCTTAATGATGGCCATTGCCAGCATTGTCCCCAACTTTCTCATGGGTATAATAATAGGAGCAGGGATTCAAGGCATATTCATGTTGGTCTCTGGCTACTTCAGGCTCCCACATGATATCCCAAAGCCAGTGTGGCGCTACCCAATGTCATATATCAGTTTCCACTTTTGGGCATTACAGGGACAATACCAGAACGATTTGCGGGGCTTGCTATTCGACAACCAAACACCAGATCTTCCCAAGATACCTGGTGAATACATCCTGGAGAATATCTTCCAGATTGATGTGAAGAGATCCAAGTGGATAGATTTAAGTGTGATTTTAAGCATGATTGTCATCTACCGCATTATCTTCTTGATGGTGATCAAGATCAATGAGGATGTTACACCCTGGATTAGAGGCTATATAGCTAGGAGAAGAATGCAGCTGAAGAATGGAACCCAGAATACAACCATTGCTCCTGATGTTCTCACTCAATCCCCATCCCTCAGAACCTATATCTCGATTTAA 2172 0.4332 MEIMEASKAAGLSPLSESIWREKTNTELIGDVSARLTWKDLTVMVTLSNGESQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETICYSAHLRLPDKMAWSDKRALVESTIVAMGLQDCADTAIGNWHLRGISGGEKRRVSIALEILTRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPNSEVFELFDQLYLLSGGKTVYFGKASEAYEAIIKLIIHPLLPFSLISLKISVIVKKLNGVFFIITSVICLQFFAQAGFPCPALRNPSDHFLRCINCDFDKVKATLSGSMKLRSEGSDDPLDKITTAEAIRTLTDYYRTSQYSYAAIQKVDEISKVKGTVLDAGGSQASFLMQSYTLTKRSFTNMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSATPFLILITFLSGTICYFMVGLHPGFRHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLLFDNQTPDLPKIPGEYILENIFQIDVKRSKWIDLSVILSMIVIYRIIFLMVIKINEDVTPWIRGYIARRRMQLKNGTQNTTIAPDVLTQSPSLRTYISI. 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06105 723 SMART AAA_5 65 236 IPR003593 GO:0016887
Seca8g06105 723 Pfam ABC transporter 58 207 IPR003439 GO:0005524
Seca8g06105 723 CDD ABCG_EPDR 33 261 - -
Seca8g06105 723 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 36 279 IPR003439 GO:0005524
Seca8g06105 723 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 24 698 - -
Seca8g06105 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 268 IPR027417 -
Seca8g06105 723 Pfam ABC-2 type transporter 410 616 IPR013525 GO:0016020|GO:0140359
Seca8g06105 723 ProSitePatterns ABC transporters family signature. 179 193 IPR017871 GO:0005524|GO:0016887
Seca8g06105 723 Gene3D - 30 273 IPR027417 -
Seca8g06105 723 FunFam ABC transporter G family member 11 30 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06105 Seca-Chr8 154936146 154941668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06105 54 247 Calmodulin-binding Proteins AT2G36910 31.220 6.28e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06105 K05681 - gmx:100803731 1220.3