Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06054 ATGAATAGTCATTCATTTCTAGAAGCTTCTAAAGACATGGACCCTAGCAATTTTTATGTTGACAAGAGGGCAGAGAAAAAGATAACATACAAGGAATGTCTAAAGAACCATGCAGCTGCAATTGGTGGCAATGCAACTGATGGATGTGGTGAGTTCATGCCTGCTGGAGAAGATGGAACACTTGAGGCTCTTAAGTGCTCAGCTTGCAATTGCCACAGAAACTTTCACAGAAAAGAGATAGAGTCTGATTCCAATTGTCCTTCTCAACATTATGCTCTTCCACTCCTTGCTGATACTACACATATTAGGCCCATTTTGGCTAATTTATCTCCCAACAAAAGTGGGTCAATTAGTCCTTCTGATCAGTCTGATGAGAAGGAATATGAAGGTGGGATTAAGGAGGTGGAAAATCCAACTGAAAATGTGAAGAAGAGGTCCAGAACTAAGTTCACACAAGAACAGAAGGAGAAGATGCTGGGTTTTGCAGAAAAGGCAGGGTGGAGGATACAGAAACTAGAGGAATCTGTGGTGCAGAAGTTTTGCCAAGAGGTTGGAATCAAGAGAAGAGTGCTCAAAGTGTGGATGCACAATAACAAGAACACTTTTGCCAAGAGAAATCTCTCCATTAGCTAG 633 0.4155 MNSHSFLEASKDMDPSNFYVDKRAEKKITYKECLKNHAAAIGGNATDGCGEFMPAGEDGTLEALKCSACNCHRNFHRKEIESDSNCPSQHYALPLLADTTHIRPILANLSPNKSGSISPSDQSDEKEYEGGIKEVENPTENVKKRSRTKFTQEQKEKMLGFAEKAGWRIQKLEESVVQKFCQEVGIKRRVLKVWMHNNKNTFAKRNLSIS. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06054 210 Gene3D - 132 204 - -
Seca8g06054 210 MobiDBLite consensus disorder prediction 120 151 - -
Seca8g06054 210 NCBIfam homeobox domain, ZF-HD class 143 200 IPR006455 -
Seca8g06054 210 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 20 201 - -
Seca8g06054 210 SUPERFAMILY Homeodomain-like 139 204 IPR009057 -
Seca8g06054 210 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 80 IPR006456 -
Seca8g06054 210 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Seca8g06054 210 MobiDBLite consensus disorder prediction 107 151 - -
Seca8g06054 210 FunFam Zinc-finger homeodomain protein 2 132 204 - -
Seca8g06054 210 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06054 Seca-Chr8 154167230 154167862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06054 28 206 ZF-HD Transcription Factor Family AT1G14440 53.608 1.51e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca8g06054 ZF-HD_dimer 3.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06054 - - gmx:100793926 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06054 8 154167230 154167862 Seca8g06054 8 154167230 154167862 ECH