Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06052 ATGGTCGTGAACGGAGGAAAGCCCTTGAAGCGCATGAAAAGGAGAGTCACCGCCGATTTCTACGACTTCCTCACGTTTCCCTCGCCGTCACTCGCCGCTTCGGAAAACTTCGCCGGCGGACCCTTCCGGTCCAACGTCCGCTCCTTCCTCACCAAGCACGCGCTGCTTCCGCCGCCATCGGCGCTCTTCCCCCACCTGTTGACGTGGCAGATCCTCTTCCGGATCGGAGATCTCACCGACGGCCCCGAATCGGGCCCGGCGGTGGTGTGTCTTGACGTCGTGGAGGAGGACGTGGCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGTGGCCATCCAGTGTGCGGGAAACGCTACCATTTTATAATCAAAGCAGATGGGAGCTCCATTGGTGGGTACCACAAGCCATGTATGTGTTGTGGAGATATCTTGCATTTGTCGGAATCCAAGTGCAAGTCATGCAACCATGTGACAACCACTGATGATGTTGAAGACTGGGTGTACCATCAATTAGAGAGCACGACTCATCTTTTACATGGTGTAGTCCATGCCAATGGTTATGGACACCTTCTTCGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCTGGTTGCCACATTATGGATTTCTGGGATCGCCTATGCAAGACACTTGGAGTCAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATATGGGCTAGAGTATCGCTTGTTCCATGCCATTATGAAGGGACATCCGTGGTACGGTGACTGGGGTTATAAATTTGGCTCTGGTAGCTATTGTCTCACACAGGAAGCATATACGTCAGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCGTCTTCCACTCCCAGGAACAACAGCCCCATTCACGTGTGCAGGATATGATCTCATATTACCAGTCTTTGTCAGAGCATGAGCTTGTAAATATCAGGGACCTCTTTTGTTTTTTGATGGGTTTGATTCATAATGCTCGCAAGACTGCATCAAAGGTTGATGACATAACCTGCAAGAAGCGTCGTTTAAATGCTTCTGGACTATCAAGTTCTTGGGAGAAGAGTGATGTTGAACGTGTGGAGGAAGCCATGATCAGAGTGCTGCGTGCAGTGTCTGGGTCTAATTGGGTGAGCTGGCGCGCTCTTAGAGGTGCTGTCTGTAAGGTGGCCTCTCCAGAGCTGCTTGATTATTGTCTTGGAGAATTGGGAGGAAAAGTGGTCTATGGTGGAATGGTTGTTAATAGCCGATGCAATCCTCAAACTGGAGTTTATGAGTTCAGGTTAGACTTCAATCTGATTCTTATGGGGTGTTTGCCCTTTGGTCTTTTCCAGTTTAACTCCTTCAAAGGATGTCGTACGCACTGTCTTTTCCACTGCTTAGTTTTACGCTTTTCAAGTTATGGTGAAGCTGAACTTATGTTTGATCTTTGCATGATCAATTGA 1461 0.4873 MVVNGGKPLKRMKRRVTADFYDFLTFPSPSLAASENFAGGPFRSNVRSFLTKHALLPPPSALFPHLLTWQILFRIGDLTDGPESGPAVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLESTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLFHAIMKGHPWYGDWGYKFGSGSYCLTQEAYTSAVESLSNLPLSVFHSQEQQPHSRVQDMISYYQSLSEHELVNIRDLFCFLMGLIHNARKTASKVDDITCKKRRLNASGLSSSWEKSDVERVEEAMIRVLRAVSGSNWVSWRALRGAVCKVASPELLDYCLGELGGKVVYGGMVVNSRCNPQTGVYEFRLDFNLILMGCLPFGLFQFNSFKGCRTHCLFHCLVLRFSSYGEAELMFDLCMIN. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06052 486 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Seca8g06052 486 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06052 Seca-Chr8 154140527 154145635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06052 86 435 PHD Transcription Factor Family AT5G22260 32.970 2.18e-58 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06052 K26271 - gmx:100818189 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06052 8 154140527 154145635 Seca8g06052 8 154140527 154145635 ECH