Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06040 ATGGCTTCCTTGGCCACTTCCACTGCCTTGGGCAGGTCAGAAATGCTTGGAAACCCTGTGAGCCTCAGTGGTGGCACAAGGTCAGCTCCATCACCCTCTAGCCCTGCCACATTCAAAACTGTTGCTCTTTTCTCTAAAAAGAAGGCAGCAGCACCACCACCAAAGCAAAAGCCTGCTGCTGTATCTCCTGCCAGTGAGGAACTCGCCAAGTGGTATGGTCCTGACAGAAGGATCTTCTTGCCAGAGGGTCTCTTGGACAGATCAGAGATCCCAGAGTACTTGAATGGAGAAGTTCCTGGAGATTATGGTTATGACCCATTTGGACTTAGCAAGAAGCCAGAGGACTTTGCCAAATATCAAGCATTTGAGTTGATTCACGCCAGATGGGCTATGCTTGGTGCTGCTGGGTTCATCATTCCTGAGGCCTTAAATAAATTTGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGGTTTGCAAGCTTTGTGAATAG 495 0.4889 MASLATSTALGRSEMLGNPVSLSGGTRSAPSPSSPATFKTVALFSKKKAAAPPPKQKPAAVSPASEELAKWYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNKFGANCGPEAVWFKVCKLCE. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06040 164 MobiDBLite consensus disorder prediction 1 37 - -
Seca8g06040 164 Gene3D Chlorophyll a/b binding protein domain 78 163 - -
Seca8g06040 164 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 35 159 IPR001344 GO:0009765|GO:0016020
Seca8g06040 164 MobiDBLite consensus disorder prediction 47 66 - -
Seca8g06040 164 SUPERFAMILY Chlorophyll a-b binding protein 70 158 - -
Seca8g06040 164 Pfam Chlorophyll A-B binding protein 91 157 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06040 Seca-Chr8 154026657 154027788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06040 9 163 Chloroplast and Mitochondria Gene Families AT4G10340 75.000 4.15e-71 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06040 K08916 - gmx:100817348 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06040 8 154026657 154027788 Seca8g06040 8 154026657 154027788 ECH
Seca10g04294 10 97326348 97328640 Seca8g06040 8 154026657 154027788 PCT