Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06033 ATGGGTTTTTCAGTGCTACTACTTCTCTTCTCTCTTCTGTTTTTCCTCTTAAACCCAACATGGGTCTGTGGGAATGCAGAGCTAAGAGCACTGATGGACTTGAAAGCCAGTTTGGACCCAGAGAGCCATTATCTACCCTCCTGGACTATCAATGGCAACCCATGTGATGGATCTTTTGAAGGAGTAGCATGCAATGAGAAGGGTCAAGTGGCTAACATTTCTTTGCAGGGAAAGGGCCTCTCAGGGAAGCTTTCACCAGCCATTGCTGGCCTCAAGCATTTGACAGGACTCTACTTGCATTATAACTCTTTGTATGGAGAGATACCAACAGAAATTGCAAACTTGACTGAGCTTAGTGATTTGTATTTGAATGTGAATCATCTCTCTGGGGAAATCCCTTCTGAGATCAGCAGCATGGAGAACTTGCAAGTTTTGCAGCTTTGTTATAATCAGTTGACAGGAAGCATACCTACACAGCTTGGTTCTTTGAAAAAGCTAACTGTTGTGGCTCTGCAGTCAAACCAGTTATCTGGTGCTATCCCTGCTAATCTAGGTGATTTGGGTATGCTGGTGAGGCTAGATTTGGGCTCTAACAATCTCTTTGGTTCCATTCCCACTAGCCTAGCTGATGCTCCATCACTGAAAGTTTTGGATGTTCACAACAATACACTTTCTGGGAATGTACCTCTTGCTCTTAAGAGACTAGATGATGGGTTTTCTTATGAAGACAATTTGGGGTTATGTGGAGTTGGGTTTCCAACCTTGAAAACTTGCAATGATTCAGATCATGCCAATCCAAGCCGACCTGAACCTACAAGAGATATCCCAGAAACTGCAAATGTGAAGTTACCTTGCAATGGAACTCGGTGCCTTAATTCATCAAAATCTAATCCAGCCACATCAATTATTGTTGGCATATTTGTGGCTATAATTGCAATGTCAGCAATTGGTATTTTGACCTTCACACTATACCGTCGGCGAAAACAAAAGCTTGGAAATTCTTTTCATATCTCTGATAGCCGTCCAAGTACTGATGAAGCCAAGGGTATATACAGGAAAAATGGATCTCCTTTGGTCAGTCTTGAGTACTCTACTGGATGGGACCCTTTAGCTGATAGTAGGAGTTTCAATGGGGATAGCCAGGATAGGTTCCAGAGTTTTAGGTTCAACTTGGAAGAAGTTGAATCAGCTACTCAATATTTCTCAGAACTGAATTTGTTGGGAAAGAGTAACTTCAGTGCAACATATAAAGGAGTTCTAAGAGATGGATCTGTTGTTGCTGTGAAGAGCATTAGTAAAACAAGTTGCAAGTCTGATGAAGCTGAGTTTTTGAAGGGACTGAATATGTTGACTTCACTGAGGAATGATAATTTAGTAAGGTTGAGAGGATTTTGTTGTTCAAGGGGACGAGGTGAATGCTTTCTGATTTATGATTTTGTTCCTAATGGAAATCTGTCACGCTTCCTTGATGTGAAGGAAGGTGATGGAGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGATTGCTAAAGGTATAGCATATTTACATGCATACAAAGCAAACAAACCGGTTCTTGTTCACCAAAACATTTCAGCTGACAAAGTTCTCATTGATCGGCGCTACAATCCATTGCTAGCAGATTCTGGCTTGTACAAGCTTCTCACTAATGATATTGTCTTCTCTGCACTTAAGGCTAGTGCAGCAAAGGGTTACTTGGCTCCTGAATACACCACTACTGGCCGGTTTACAGAGACAAGTGATGTTTATGCTTTTGGGGTGCTGCTTTTCCAGATCCTTTCAGGGAAACAGAAGATAACTAGTTCAATAAGGCTTTCTGCAGAATCATTCAGATTCAAGGAATTTATTGACCCAAATCTCTATGGCAGGTTCTTTGAATATGAGGCAGCTAAGCTGGTAAAAATAGCTTTGCTTTGCACCCATGAGTCTCCTTTTGAGAGGCCATCCATGGAAGTCATTGTTCAAGAACTGGGAAATTGTAGTAGCTGTCTCTGA 2022 0.4154 MGFSVLLLLFSLLFFLLNPTWVCGNAELRALMDLKASLDPESHYLPSWTINGNPCDGSFEGVACNEKGQVANISLQGKGLSGKLSPAIAGLKHLTGLYLHYNSLYGEIPTEIANLTELSDLYLNVNHLSGEIPSEISSMENLQVLQLCYNQLTGSIPTQLGSLKKLTVVALQSNQLSGAIPANLGDLGMLVRLDLGSNNLFGSIPTSLADAPSLKVLDVHNNTLSGNVPLALKRLDDGFSYEDNLGLCGVGFPTLKTCNDSDHANPSRPEPTRDIPETANVKLPCNGTRCLNSSKSNPATSIIVGIFVAIIAMSAIGILTFTLYRRRKQKLGNSFHISDSRPSTDEAKGIYRKNGSPLVSLEYSTGWDPLADSRSFNGDSQDRFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSVVAVKSISKTSCKSDEAEFLKGLNMLTSLRNDNLVRLRGFCCSRGRGECFLIYDFVPNGNLSRFLDVKEGDGEVLEWSTRVSIVKGIAKGIAYLHAYKANKPVLVHQNISADKVLIDRRYNPLLADSGLYKLLTNDIVFSALKASAAKGYLAPEYTTTGRFTETSDVYAFGVLLFQILSGKQKITSSIRLSAESFRFKEFIDPNLYGRFFEYEAAKLVKIALLCTHESPFERPSMEVIVQELGNCSSCL. 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06033 673 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Seca8g06033 673 Gene3D Ribonuclease Inhibitor 26 138 IPR032675 -
Seca8g06033 673 CDD STKc_IRAK 407 666 - -
Seca8g06033 673 FunFam Protein NSP-INTERACTING KINASE 2 480 670 - -
Seca8g06033 673 SUPERFAMILY Protein kinase-like (PK-like) 379 666 IPR011009 -
Seca8g06033 673 SUPERFAMILY L domain-like 23 232 - -
Seca8g06033 673 Pfam Protein tyrosine and serine/threonine kinase 405 666 IPR001245 GO:0004672|GO:0006468
Seca8g06033 673 Gene3D Transferase(Phosphotransferase) domain 1 480 672 - -
Seca8g06033 673 FunFam Leucine-rich repeat receptor-like kinase 26 135 - -
Seca8g06033 673 FunFam Protein NSP-INTERACTING KINASE 2 372 479 - -
Seca8g06033 673 FunFam Protein NSP-INTERACTING KINASE 2 137 259 - -
Seca8g06033 673 MobiDBLite consensus disorder prediction 260 279 - -
Seca8g06033 673 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 163 667 IPR046959 -
Seca8g06033 673 Gene3D Ribonuclease Inhibitor 139 260 IPR032675 -
Seca8g06033 673 ProSiteProfiles Protein kinase domain profile. 401 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06033 673 CDD TM_EGFR-like 296 330 - -
Seca8g06033 673 Gene3D Phosphorylase Kinase; domain 1 371 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06033 Seca-Chr8 153962455 153965632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06033 4 514 Miscellaneous Gene Families AT4G22730 56.333 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Seca8g06033 PK_Tyr_Ser-Thr 3.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06033 - - gmx:100775422 1168.68