Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06030 ATGGAGGAAAGAGAGAATTTTGGTGTTGGGCATGCAGTGGTAGGTGATGAAGCTCCAGCGAGCTTCCACGTGGCTCCCAGAATTGAGAACAACTTGGATTTTTCGAGGGGTACTATGCCGGTTCCGGTGCCGGCGACGGAGGGGAAGAAGAAGAGGGGGAGACCTAGGAAGTATGGACCTGACGGCAGGGTGATGTCAGGGACAGTGACGGCGCTTTCTCCAATGCCGATTTCATCGTCTATTCCGTTGACCGGCGAATTCTCCGCTTGGAAACGAGGTAGAGGGAAACCTGTTGAATCTATCAAGAAGTCATCATATAAGCTTGAATTTGAAAGTCCAGGATCAGTACCAGTACCAGTACCAGTACCAGTATCAGTACCAGGACCAGTACCAGGACCAGGACCAGGTGAAGGAATTGCATACTCAGTTGGTGCCAATTTCACACCGCATGTGCTTACAGTAAATGCTGGCGAGGATGTTACCATGAAGATTATGTCCTTCTCTCAACAAGGATCACGTGCTATATGCATTCTCTCTGCGACTGGCACAATTTCAAATGTTACACTTCGTCAACCAAGTTCTTCCGGGGGTACTTTAACATATGAGGGACGGTTTGAGATTCTTTCCTTGTCTGGTTCTTTTATGCCAACTGAGAATGGAGTTACAAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCAGATGGTCGAGTAATGGGTGGTGGACTTGCTGGTTTGCTGGTAGCCGCTGGTCCTGTGCAGGTTGTTGTGGCCAGTTTTCTTCCCGGTCACCAGCTGGAGCATAAAAGCAAGAAGCAGAGGGTGGATCATATATCAACTATTACCTCTTCACCTGTTAATCTTATCTCTAGTGAGGAAATAAAAGTCAGTTTTGGTGGAGTAAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATATTGCTTCTTTTAACAATGTTCAAGACTCTAGGAACTCATCTGCTGATGATAAAGATCCTTTACCTGAAAAGGAATCTAACCTAAGTCAATCAAATGCTGAGGCAGCATGCTAA 1062 0.4652 MEERENFGVGHAVVGDEAPASFHVAPRIENNLDFSRGTMPVPVPATEGKKKRGRPRKYGPDGRVMSGTVTALSPMPISSSIPLTGEFSAWKRGRGKPVESIKKSSYKLEFESPGSVPVPVPVPVSVPGPVPGPGPGEGIAYSVGANFTPHVLTVNAGEDVTMKIMSFSQQGSRAICILSATGTISNVTLRQPSSSGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVASFLPGHQLEHKSKKQRVDHISTITSSPVNLISSEEIKVSFGGVKPIMTPAAFQEENIASFNNVQDSRNSSADDKDPLPEKESNLSQSNAEAAC. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06030 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 331 IPR039605 GO:0003680
Seca8g06030 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 149 262 IPR005175 -
Seca8g06030 353 FunFam AT-hook motif nuclear-localized protein 1-like 149 279 - -
Seca8g06030 353 ProSiteProfiles PPC domain profile profile. 144 286 IPR005175 -
Seca8g06030 353 CDD DUF296 148 262 IPR005175 -
Seca8g06030 353 Gene3D - 149 282 - -
Seca8g06030 353 MobiDBLite consensus disorder prediction 322 353 - -
Seca8g06030 353 MobiDBLite consensus disorder prediction 33 66 - -
Seca8g06030 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 146 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06030 Seca-Chr8 153928517 153934445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06030 49 323 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 52.258 6.18e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06030 - - gmx:100789179 554.673