Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06007 ATGTCAGGATTGGAACTCATACCCATAGGTACAATTTTGACTCTGGTAACTGACCAGGTCTTGAGAACAGCTCATGCAGCAGCTGATGTTCTTATTGGTAAAGAAAGTTTCAAGGCCCTTTCAAAATATCTATTTGATATTGAGCCTGTGCTAAAGGAATTACAACTTCGGGAAGTGAATGATTCTCAAGCTGCAAGAGTTGCTTTAGAGTCTCTTGAAGGAGATGTTAAAAGGGCGAATAATTTGGTTGAGAAGTATAGGAACCGTGGCCGTTTTTACTTGCTGGTTAAGTGTCGTTCCATAGTTGAGGAGGTTGAACAAGTCACAAGGGGTATTGGAAGGTCTCTGGATGCACTGTCTATTGCAAATACTGAAGTGCTATCAAGAATTTCTGATCAGGTTGATAGACTGCAGAATGAGATGCAAAAGGTGGAGTTTGAGGCTTCACAATCTCAGCTACAAATTGTTGATAAGTTGAACCAGGGACTTAGAGAACAGAAACTAGATCAGGCTTTTGCAAATGACATCCTTGACGATATAGCAAGGGCAGTTGGGGTACCAGTGGAACCCTCAGAAATAAGCAAAGAGTTGGCCAGCATTAGGAGGGAAAAAGAAGAAGCTGCCAACAGAAAAGAACAAGCTGAATATATATTTTTGGAGCAGATCATTAAGTTACTCTCTCGAGCCGATGCAGCAAGGGATTATGAAGAAGTTAAGAATCAATACATTGAAAGGGTTCAGGTCATAGAGAGATATGATCCAAGGGAAAAATATATCCTCCCACTTAAGTCTTTCCTCTGTTGCATAACTGGAGCTGTTATGGTAGATCCTGTCAGCCTTTGCACAGGTACTACATGTGAGAGATCTGCTATTGAAGCTTGGTTTTATGATGGCAACAGGACAGACCCAGAAACAAAAGAGGTTCTTGAAGATACTACCTTGAGGTCTAACATTCCACTAAGACAATCCATTGAAGAGTGGAGAGAAATTAATTACTGTCTTGTAATAAGGTCTATCAGGGAAAATTTATTATCAAATTCTGATTTGCAAGAATCCATGAGCCAAATGCAGGCTCTAATAAAGGAGAATTCTATTAACAAGGATTGGATTTCTGTAGGAGGGCTTACTGATATTGTTATCTCTATCCTTGGGAGCTCTAATGACACAGAAGTTAAGATGAAGATTTTGAATACTTTGAAAGATGCAGTAGAGGGACATGCAAGAAACAAGGAGAAAGTGGCTGAATCTCAAGGATGGGATCACATTATTTCCTGCTTAGGGGGTGACTCCAGCATTTCAACGGCTGCAATTGATTTGCTATATGAGTTGCTTCAAGACCGATCTGGTTGGAATCAATGCTTTTGTAAAAAACTTTGTGAAAATCTCACTGCAGTTGCTTTCCTTGTCACCCTTCTAAAAAATCCTGTCAGCAATTCAGCTGAGGTTGTAGAGAAGATTTTGATGGAGCTTTTTGAAATAAATGAGGACAGCATTATTACTGCTGCTAATTGTGGCTGGTATAAACCACTTTTTGATCGCATGATCCGAGGACCGGATTCAAGAATATCAATGGCAAAAGCGATAGTTAATTTGGAGTTGGATGATTTAAACTTGAAACTCCTTGGCCAAGAAGGAGTTATACCTCCTTTGCTGGAAATGCTGTCTGGTAGTATTGAATCAAAAGACTTGTCATTATCAGCCCTGGTTAAACTGGCAGGATCTCATGCGAATAAGAGAATTATTGCTGCATCTGGAGGTGTTCCTCTTATTCTAGATTTAATGTTCTCTCCTCAGATAAGGACATTCATCACCATTAAATGCTCTGAAATCCTTGAGAAGCTTTCTTCTGATGATGATGGAATTGATTTCTTTGTTGATGGAGAAGGTAAACAACTTGAGTTAGATTCCATCATCACCAAATTGCTAGCTCTGCAGCAGAATTCCAACTCAGGTCATAACTTCCGTAAGCCCACACTACGTGCTCTTCTTGGCATTTGCAAGTTTGAGACTGGTTTGGTGAAGAAAGCAATTCTTGCAGCCAATGGTGTATCACTAATTCTTCCACTTCTTGATGATTCTGACTCAGAAATCCGGGAGACTGCCATAAGCCTGCTCTTTCTTTTCTCTCAGCATGAGCCAGAAGGAGTTGTTGAATACCTCTTCAGGCCTAGAAGGTTGGAAGCTTTGATTGGATTTCTTGAGAATGATGACAATGCTAATGTACAGATGGCTGCTGCTGGTTTACTAGCTAACCTTCCAAAATCAGAACGAGAACTCACTATGAAGTTGATTGAATTGGGTGGACTTGATGCAATCATAAGCATTTTGAAAACTGGGAAAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGACCCTACAAATATTGAGTCACAACGTGATTTGGTTAAACGTGGAATATATCCTTTGCTTGTAGATTTTCTCAATACAGGTTCAGTCACAGCAAAGGCAAGAGCAGCAGCTTTTATTGGTGATCTTTCTATGAGCACTCCAATGCTCACAGTTGTTTCCAAATCACCTAGTTGCTGGTTTTTTAAATCATCACGTGTTCCTTTATGTCCAGCACATGACAGTATATGCAGTGTGGCCACCACATTTTGTCTGTTGGAAGCAAATGCTTTGCCTGGCTTGATAAAGTTATTACATGGGGAGGTTCATGCTACTGCTTATGAAGCAATACTGACACTTTCAACATTGGTTTTGGAAGACTTTCCTCAAAGGGGAGCTCGTGTCTTGCATGAGTCAAATGCAATAAAACCCCTATTGGACATTTTGAATTGGGGAAGTGATTCTCTCAAGGCAGAAGCTCTAGGACTGTTGGAGAAGGTTTTTGTGTCAAAGGAAATGGTAGAACACTATGGAACAACAGCTAGATCACGGCTAATTGGACTAACTGGCACGAATATATATGGGGATGGCCATCTCAGGAGAAAGGCTGCCAAGGTACTATCATTGCTTGAACGCTATTCAAAGTCATCATCATCTGCAGTCTCCGGAATTCTGGAGTGA 3042 0.4057 MSGLELIPIGTILTLVTDQVLRTAHAAADVLIGKESFKALSKYLFDIEPVLKELQLREVNDSQAARVALESLEGDVKRANNLVEKYRNRGRFYLLVKCRSIVEEVEQVTRGIGRSLDALSIANTEVLSRISDQVDRLQNEMQKVEFEASQSQLQIVDKLNQGLREQKLDQAFANDILDDIARAVGVPVEPSEISKELASIRREKEEAANRKEQAEYIFLEQIIKLLSRADAARDYEEVKNQYIERVQVIERYDPREKYILPLKSFLCCITGAVMVDPVSLCTGTTCERSAIEAWFYDGNRTDPETKEVLEDTTLRSNIPLRQSIEEWREINYCLVIRSIRENLLSNSDLQESMSQMQALIKENSINKDWISVGGLTDIVISILGSSNDTEVKMKILNTLKDAVEGHARNKEKVAESQGWDHIISCLGGDSSISTAAIDLLYELLQDRSGWNQCFCKKLCENLTAVAFLVTLLKNPVSNSAEVVEKILMELFEINEDSIITAANCGWYKPLFDRMIRGPDSRISMAKAIVNLELDDLNLKLLGQEGVIPPLLEMLSGSIESKDLSLSALVKLAGSHANKRIIAASGGVPLILDLMFSPQIRTFITIKCSEILEKLSSDDDGIDFFVDGEGKQLELDSIITKLLALQQNSNSGHNFRKPTLRALLGICKFETGLVKKAILAANGVSLILPLLDDSDSEIRETAISLLFLFSQHEPEGVVEYLFRPRRLEALIGFLENDDNANVQMAAAGLLANLPKSERELTMKLIELGGLDAIISILKTGKMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVDFLNTGSVTAKARAAAFIGDLSMSTPMLTVVSKSPSCWFFKSSRVPLCPAHDSICSVATTFCLLEANALPGLIKLLHGEVHATAYEAILTLSTLVLEDFPQRGARVLHESNAIKPLLDILNWGSDSLKAEALGLLEKVFVSKEMVEHYGTTARSRLIGLTGTNIYGDGHLRRKAAKVLSLLERYSKSSSSAVSGILE. 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06007 1013 Coils Coil 69 89 - -
Seca8g06007 1013 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
Seca8g06007 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Seca8g06007 1013 Gene3D - 516 848 IPR011989 -
Seca8g06007 1013 Coils Coil 127 154 - -
Seca8g06007 1013 CDD MLKL_NTD 34 145 - -
Seca8g06007 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1005 - -
Seca8g06007 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Seca8g06007 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Seca8g06007 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Seca8g06007 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Seca8g06007 1013 SMART arm_5 799 839 IPR000225 GO:0005515
Seca8g06007 1013 SMART arm_5 916 956 IPR000225 GO:0005515
Seca8g06007 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Seca8g06007 1013 SMART arm_5 712 754 IPR000225 GO:0005515
Seca8g06007 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Seca8g06007 1013 SUPERFAMILY RING/U-box 253 331 - -
Seca8g06007 1013 CDD RING-Ubox_PUB 265 314 IPR045210 -
Seca8g06007 1013 Gene3D - 860 1009 IPR011989 -
Seca8g06007 1013 Gene3D - 8 123 IPR036537 GO:0007166
Seca8g06007 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Seca8g06007 1013 SUPERFAMILY ARM repeat 648 1001 IPR016024 -
Seca8g06007 1013 SUPERFAMILY ARM repeat 362 718 IPR016024 -
Seca8g06007 1013 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 724 752 IPR000225 GO:0005515
Seca8g06007 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 333 IPR013083 -
Seca8g06007 1013 Coils Coil 197 217 - -
Seca8g06007 1013 Gene3D - 345 491 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06007 Seca-Chr8 153637219 153647417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06007 263 965 U-box Gene Family AT1G76390 27.224 1.45e-39 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06007 - - gmx:100783638 1651.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06007 8 153637219 153647417 Seca8g06007 8 153637219 153647417 ECH