Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06006 ATGGAACCGCCATTGCAACAGCAACCGCCACCACAGCCACCGCCGCGATCTGCCACCATCCTTGGAAAGTACCAGCTAACCCGTTTCCTCGGCCGTGGCAGCTTTGCCAAGGTGTACCAGGCTCGTTCCCTTGTCGACGGCACCACCGTCGCCGTCAAGATCATCGACAAGTCGAAGACGGTGGACGCCGCCATGGAGCCCCGCATCGTTCGCGAGATCGATGCCATGCGCCGCCTCCACCACCACCCGAACATCCTCAAAATCAACGAGGTCATGGCAACCAAGACCAAGATCCACCTCGTCGTCGAGTTCGCCGCCGGCGGAGAGCTCTTCTCCGCGATCTCCCGCCGTGGAAGGTTACCGGAGAACACCGCTCGCCGCTACTTCCAGCAGCTTGTCTCCGCCCTCCGCTTCTGCCACCGTAACGGCGTCGCACACCGTGACCTCAAACCGCAGAATCTCCTCCTCGACGCCGACGGTAACCTCAAGGTCTCCGACTTCGGCCTCTCTGCTCTTCCGGAGCACCTCAATAACGGCCTCCTCCACACCGCCTGCGGAACTCCGGCATACACCGCGCCGGAGATCCTCCGCCGGAGCGGAGGCTACGACGGCTCCAAAGCCGACGCATGGTCCTGCGGTCTCATTCTCTTCGTCCTCCTCGCCGGTCACCTTCCGTTCGACGATTCGAACATTCCAGCGATGTGCAAGAAGATCACGCGGCGAGATTACAAGTTCCCCGATTGGATTTCAAAACGCGCCCGTTTTGTAATCTATCGGTTACTTGACCCGAACCCGGAAACACGGATGGGCCTGGAGGCCCTGTTTGGGAACACGTGGTTCAAGAAATCGCTGGGTCCCGAAGCGGAAGAGAGCGTGTTGGGGTTGGATGCGAGTTACGGAACAAATGAAGGGAAAGGTTCGGGTGTGAACGCGTTTCATATAATATCCATGTCATCGGGTTTGGATTTGAGGGGGTTGTTTGAAACGACGTCGGATGGTGAGAATAAGAGGGAAAAGAGATTCACATCGAGTGCGAAGGTGGAAGTGGTGGAGGAGAAGGTGAAAGAAGTGGGAGGGGTTTTGGGGTTTAAGGTTGAGGTTGGGAAGAATAGTGCAATTGGATTGGTGAAAGGGAAGGTGGCTTTGGTGGTTGAGGTGTTTGAGATTTTGCCTGCACAACTGCTTTTGGTAGCAGTGAAGGTTGTGGAAGGTGGGTTGGAGTTTGAGGATCATCATTGGAGAGATTGGAAAGTTGCCTTGCAAGACCTTGTGCTTTCTTGGCACAATGAAGAATCCTGA 1299 0.562 MEPPLQQQPPPQPPPRSATILGKYQLTRFLGRGSFAKVYQARSLVDGTTVAVKIIDKSKTVDAAMEPRIVREIDAMRRLHHHPNILKINEVMATKTKIHLVVEFAAGGELFSAISRRGRLPENTARRYFQQLVSALRFCHRNGVAHRDLKPQNLLLDADGNLKVSDFGLSALPEHLNNGLLHTACGTPAYTAPEILRRSGGYDGSKADAWSCGLILFVLLAGHLPFDDSNIPAMCKKITRRDYKFPDWISKRARFVIYRLLDPNPETRMGLEALFGNTWFKKSLGPEAEESVLGLDASYGTNEGKGSGVNAFHIISMSSGLDLRGLFETTSDGENKREKRFTSSAKVEVVEEKVKEVGGVLGFKVEVGKNSAIGLVKGKVALVVEVFEILPAQLLLVAVKVVEGGLEFEDHHWRDWKVALQDLVLSWHNEES. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06006 432 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Seca8g06006 432 Gene3D Transferase(Phosphotransferase) domain 1 16 305 - -
Seca8g06006 432 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 20 399 - -
Seca8g06006 432 ProSiteProfiles Protein kinase domain profile. 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06006 432 SUPERFAMILY Protein kinase-like (PK-like) 20 285 IPR011009 -
Seca8g06006 432 FunFam Non-specific serine/threonine protein kinase 15 303 - -
Seca8g06006 432 Pfam Protein kinase domain 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06006 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Seca8g06006 432 Pfam NAF domain 309 366 IPR004041 GO:0007165
Seca8g06006 432 SMART serkin_6 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06006 432 FunFam Non-specific serine/threonine protein kinase 17 109 - -
Seca8g06006 432 CDD CIPK_C 310 421 - -
Seca8g06006 432 Gene3D Kinase associated domain 1, KA1 306 425 - -
Seca8g06006 432 ProSiteProfiles NAF domain profile. 304 328 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06006 Seca-Chr8 153613465 153614763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06006 3 430 Miscellaneous Gene Families AT3G23000 58.065 2.48e-170 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca8g06006 Pkinase 3.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06006 K12761 - gmx:100784173 684.485