Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06002 ATGGATGGAGCCCCTTACCTCAGAAAGATAGACCTGAGGGTCTATGGAGGCTACAGAGAACTCCTCAAAGCTTTAGAAAACATGTTCAAGTTTACCATAGGTGAGTACTCTGAAAAAGAAGGTTATAAGGGTTCTGATTATGCACCTACATATGAAGACAAGGACGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGGCTAAGAATCATGAAAGGATCAGAAGCCAGAGGTTTAGGTTGTGGTGTATGA 276 0.4239 MDGAPYLRKIDLRVYGGYRELLKALENMFKFTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCGV. 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06002 91 Gene3D - 1 91 - -
Seca8g06002 91 Pfam AUX/IAA family 1 88 IPR033389 -
Seca8g06002 91 ProSiteProfiles PB1 domain profile. 1 81 IPR000270 GO:0005515
Seca8g06002 91 FunFam Auxin-responsive protein 1 91 - -
Seca8g06002 91 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 85 IPR003311 GO:0005634|GO:0006355
Seca8g06002 91 SUPERFAMILY CAD & PB1 domains 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06002 Seca-Chr8 153498539 153500211 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06002 1 87 B3 DNA Binding Superfamily AT2G46530 37.931 7.69e-12 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca8g06002 AUX_IAA 3.2e-40 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06002 K14484 - tcc:18603114 186.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06002 8 153498539 153500211 Seca8g06002 8 153498539 153500211 ECH