Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06001 ATGGCAACTTTGCTAAGAAAGGAGCATGGTTTGAACCTCAAGGAGACTGAGCTGTGTCTGGGTCTGCCAGGAGGCGGCGGCGGAGGCGGTGGTGGTGGTGGCAGCTCTGAGGTGGAGACTCCAAGAGCATCTGGGAAGAGAGGGTTCTCTGAGACAGTTGATCTGAAGCTTAATCTTCAATCCAAGGAAGATCTGAATGAGAATCTGAAGAATGTCCCAAAGGAAAAGACCCTCCTTAAGGATCCTGCTAAGCCACCAGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCACAGAAGGTGAATAATGAGGATGGAACTGAGAAGACAACAACCAGCACTACTACTGCTGGGGCATTTGTCAAAGTTTCCATGGATGGAGCACCTTACCTTCGTAAGGTCGACTTGACTATGTACAAAAGCTACAAAGATTTATCTGATGCCTTAGCCAAGATGTTCAGCTCCTTCACCATGGATTTTTTTTTTTTATATTGGGACTGCGCTGAAGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGAGATGTCCCATGGGAGATGTTTGTTGAGTCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCGATTGGGCTTGCACCAAGAGCCATGGAAAAATGCAAAAACAGAAGCTGA 768 0.4688 MATLLRKEHGLNLKETELCLGLPGGGGGGGGGGGSSEVETPRASGKRGFSETVDLKLNLQSKEDLNENLKNVPKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVNNEDGTEKTTTSTTTAGAFVKVSMDGAPYLRKVDLTMYKSYKDLSDALAKMFSSFTMDFFFLYWDCAEGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06001 255 ProSiteProfiles PB1 domain profile. 126 237 IPR000270 GO:0005515
Seca8g06001 255 Gene3D - 121 249 - -
Seca8g06001 255 SUPERFAMILY CAD & PB1 domains 118 236 - -
Seca8g06001 255 FunFam Auxin-responsive protein 121 247 - -
Seca8g06001 255 MobiDBLite consensus disorder prediction 23 50 - -
Seca8g06001 255 Pfam AUX/IAA family 42 246 IPR033389 -
Seca8g06001 255 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 242 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06001 Seca-Chr8 153413307 153415970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06001 111 249 B3 DNA Binding Superfamily AT1G19850 25.899 9.94e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca8g06001 AUX_IAA 3.2e-80 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06001 K14484 - gmx:100810762 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06001 8 153413307 153415970 Seca8g06001 8 153413307 153415970 ECH