Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06000 ATGGCTCGGGATGGGAGCGTTGTCCCAGCAGACCCGCAGGCCTTGGCGGTTGTGAAAAAGAAGACACAATCTTCTCGAAGCTGGATTCTGCTTGATAGTACAGGCCAAGGTTCATTGCTCGACGTGGACAAGTATGCTATCATGCACCGGGTTCAGATTCACGCACGTGATCTTCGAATCCTTGATCCCTTGCTCTCTTACCCCTCTACCATTCTGGGTCGTGAGAAGGCCATTGTTCTTAACTTGGAGCATATCAAGGCAATTATTACCGCTGAAGAGGTTTTGCTGCGAGATCCAACCGATGAAAATGTGGTGCCTGTTGTTGAGGAACTGCAAAGGCGATTGCCTAAAGCAAGTGCCATTGATCAACAGCAAGGAGATGGTAAAGAGTATCTTGGTGGTCAACATGATACTGAAGCTGCTGAAGAAGATGAGTCACCCTTTGAATTCCGGGCCCTGGAGGTAGCTTTAGAAGCCATTTGTAGTTTCCTTGCTGCACGTACAACAGAATTGGAGATGGCTGCCTATCCTGCATTAGATGAACTTACCTCCAAGATTAGCAGTCGTAATTTGGACAGAGTTCGTAAACTGAAGAGTGCAATGACAAGGCTGACTGGTAGGGTTCAAAAGGTCAGAGATGAGCTCGAACAATTGCTGGATGATGATGATGATATGGCTGATCTTTACTTGTCAAGAAAGTTGGCAGGTTCAGCATCACCGGTTAGTGGATCAGGTGCTGCAAATTGGTTTGCTGCCTCCCCCACCATAGGATCAAAGATATCCAGAGCGAGTAGAGCAAGTATAGCCACAGCTCATTTAGATGAAAATGATGTGGAAGAGCTTGAAATGTTGCTTGAGGCTTATTTCATGCAAATTGATGGCACATTGAACAAATTAACCACAATAGCTTTACCTCATAGCAGTCGAGTGTCATATATTTCTAATTACTTTCCTTTTTCTTTTCACTTAAAGTTGCGAGAGTATATTGATGATACTGAAGATTATATTAATATTCAACTTGACAACCATCGTAACCAGCTGATTCAGGTGCCTTTTATGTGTTTCTGCACCATGCATGTCATCTATCAGTATTCTGTATTGTATTTTATTTCTGAGTTTGGTAAACCTTCTAATATTTTTTATCCATTGTCATCAACACTTATGCAGTTGGAGCTCTTTCTTAGCTCGGGAACTGTTTGCTTATCTTTCTACTCTTTGGTGGCTGCTATTTTTGGCATGAATATCCCATATACTTGGAATGATAACCATGGTTACATGTTCAAATGGGTAGTTATTTTCTCTGGCGTACTTTCTGCTATAATGTTTCTCATGATTACTGTCTATGCTCGCAAAAAGGGGTTGGTTGGATCATGA 1374 0.4243 MARDGSVVPADPQALAVVKKKTQSSRSWILLDSTGQGSLLDVDKYAIMHRVQIHARDLRILDPLLSYPSTILGREKAIVLNLEHIKAIITAEEVLLRDPTDENVVPVVEELQRRLPKASAIDQQQGDGKEYLGGQHDTEAAEEDESPFEFRALEVALEAICSFLAARTTELEMAAYPALDELTSKISSRNLDRVRKLKSAMTRLTGRVQKVRDELEQLLDDDDDMADLYLSRKLAGSASPVSGSGAANWFAASPTIGSKISRASRASIATAHLDENDVEELEMLLEAYFMQIDGTLNKLTTIALPHSSRVSYISNYFPFSFHLKLREYIDDTEDYINIQLDNHRNQLIQVPFMCFCTMHVIYQYSVLYFISEFGKPSNIFYPLSSTLMQLELFLSSGTVCLSFYSLVAAIFGMNIPYTWNDNHGYMFKWVVIFSGVLSAIMFLMITVYARKKGLVGS. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06000 457 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 386 455 IPR039204 -
Seca8g06000 457 Gene3D Magnesium transport protein CorA, transmembrane region 107 347 - -
Seca8g06000 457 Coils Coil 194 221 - -
Seca8g06000 457 CDD Mrs2_Mfm1p-like 28 454 IPR039204 -
Seca8g06000 457 Gene3D - 13 99 - -
Seca8g06000 457 MobiDBLite consensus disorder prediction 116 144 - -
Seca8g06000 457 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 393 445 IPR045863 -
Seca8g06000 457 FunFam Magnesium transporter MRS2-1 16 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06000 Seca-Chr8 153386186 153393803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06000 1 430 MRS2 Gene Family AT5G64560 69.838 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06000 K16075 - gmx:100810239 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06000 8 153386186 153393803 Seca8g06000 8 153386186 153393803 ECH