Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05996 ATGACTCACATTGTTGTGGAGAGAAATAGAAGAAAACAGATGAGTGAGTATCTTTCTGTTCTTAGGTCTCTAATGCCAGACTCTTATATCCAAAGGGTGACCAAGCTTCTATAG 114 0.386 MTHIVVERNRRKQMSEYLSVLRSLMPDSYIQRVTKLL. 38
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05996 37 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 37 IPR011598 GO:0046983
Seca8g05996 37 Pfam Helix-loop-helix DNA-binding domain 2 35 IPR011598 GO:0046983
Seca8g05996 37 Gene3D - 1 36 IPR036638 GO:0046983
Seca8g05996 37 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 36 IPR036638 GO:0046983
Seca8g05996 37 PANTHER MAX DIMERIZATION, MAD 1 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05996 Seca-Chr8 153362131 153362546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05996 1 32 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G22490 84.375 1.57e-13 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g05996 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05996 - - gmx:100811408 64.6994