Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05994 ATGACAAGCCTAGCGGTGAAGGTCAATAGGGCGAAGCTCTCGGCATGCTTGACGTGTCGTTTGTGCAATAAATGGTTCAAAAACGCCACCACAATATCAGAATGCTTGCATACTTTTTGCAGGGAATGTATAGATAAGAAGCTAATAGATGAGAAACTAAAGAACTGTCCAGTATGCAATGTAGACTTGGGTTGCTCTCCATTGGATAAATTAAGGGCAGATCACAGTCTGCAATATTTGAGGGAGAAAATTTTCCCCAGTGACTCTGAAGAAAAATCTGCTAAGGCACCTGAAAATGTCGATTCAGACACAGTGCCAGCCAAAAGAAAGAAAAAATCTCCATCTTCATTGAAAGCCAATGCAAGAAGAGCTAAAGCTGCTGCTGCAGTAGAAGTTATCACTCCACAAGAACCAGAGTTGCCTGCTTCTGAACCTGATAAAGTGGAAGATGCTAAGCAAGATGAAAAACAGCAAAGTGGGATAGAAATTTTGGATGAAGTTTCTACAATTCTATCTGCAAGAAGAGCAAAAGCTGCAGCAAGAAGAAAATTTATTCCATATGAATTAACTCCTCCTTGTCAACCTGACAAAGTAACAGGAAGTGAAAAGAAAGATGATGACTGTCTCCAGCTTGAAACTCTCATTGAGACTTCCAAAACCATTCTTCAGAATTGTTCAAAACCAGATTCAAGTCAAGAAATAGTGCCCAACAACAAGACTTCAGGGGACAGTGGTGAGTTATGGAAACAAAATGCTGATGTGATGTGTGAACCAATGAATTTCCAGCAGGAAATTGCAAGCAAAAACAAATCTCATAATAAGCCTACCATGCAAGAAAATGCTGTGATTCCTGTGCTTGTGGACTCTAGTGACAATGACTCTCAGGTGCCTAAGGTCAAAGAAAAGAAACATTGTCACCGAATAGAAGCAGCTTCTGACAAAAATGAATCACCTCCTCCTCCTCCAAAATCAGATTCATTAGAACTCAAAAGGCTGCACAGCAGCACCCAAGGAAAAACACTCCAAATCTCTGAGGACTTGAATCTTCCAGCACAACCTGTGATTTTTTCAAACTACGAAAGCAACATAAGATCTCGTCCAGTCTGGCTCTCATTGGTTGCTTCTGAAGAGAAGGATGTAGGTGCACAATTGCCTCAATTACCTTACCGCTACCTAAGGATCAAGGATGGTAGTTTACCTGTTTCCTTTATCAAAAAGTATCTGATAATGAAGCTTGGTCTTGCTAGCGAAGCTGAGGTGGAGATCTCATTTCAAGGCCAGCCAGTTCCATCTTCATTGCAACTGCAAAGCTTGGTAGACTTGTGGTTGCAAACAATGCCAACTTATGAGATTCGGACATGTTTTGAAAGCTCAGCTAAGGATTTTGTTATGGTCCTTTCATACAGTCGAAAGGCTTGA 1419 0.4101 MTSLAVKVNRAKLSACLTCRLCNKWFKNATTISECLHTFCRECIDKKLIDEKLKNCPVCNVDLGCSPLDKLRADHSLQYLREKIFPSDSEEKSAKAPENVDSDTVPAKRKKKSPSSLKANARRAKAAAAVEVITPQEPELPASEPDKVEDAKQDEKQQSGIEILDEVSTILSARRAKAAARRKFIPYELTPPCQPDKVTGSEKKDDDCLQLETLIETSKTILQNCSKPDSSQEIVPNNKTSGDSGELWKQNADVMCEPMNFQQEIASKNKSHNKPTMQENAVIPVLVDSSDNDSQVPKVKEKKHCHRIEAASDKNESPPPPPKSDSLELKRLHSSTQGKTLQISEDLNLPAQPVIFSNYESNIRSRPVWLSLVASEEKDVGAQLPQLPYRYLRIKDGSLPVSFIKKYLIMKLGLASEAEVEISFQGQPVPSSLQLQSLVDLWLQTMPTYEIRTCFESSAKDFVMVLSYSRKA. 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05994 472 MobiDBLite consensus disorder prediction 88 160 - -
Seca8g05994 472 MobiDBLite consensus disorder prediction 226 245 - -
Seca8g05994 472 Gene3D - 356 449 - -
Seca8g05994 472 MobiDBLite consensus disorder prediction 294 313 - -
Seca8g05994 472 MobiDBLite consensus disorder prediction 283 335 - -
Seca8g05994 472 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Seca8g05994 472 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 471 IPR044807 GO:0004842
Seca8g05994 472 SMART ring_2 19 59 IPR001841 -
Seca8g05994 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 111 IPR013083 -
Seca8g05994 472 SUPERFAMILY RING/U-box 15 70 - -
Seca8g05994 472 MobiDBLite consensus disorder prediction 88 110 - -
Seca8g05994 472 CDD RING-HC_PCGF 17 60 - -
Seca8g05994 472 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Seca8g05994 472 MobiDBLite consensus disorder prediction 142 160 - -
Seca8g05994 472 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05994 Seca-Chr8 153337145 153341918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05994 4 395 C3H Transcription Factor Family AT2G30580 32.412 3.95e-44 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05994 K16277 - qsu:112004742 310.457