Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05981 ATGGTAAGAGCTCCTTGTTGTGAAAAGATGGGTTTGAAGAAGGGTCCTTGGTCTCCTGAGGAAGATCAAATCCTCACTTCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCCAAGCAAGCAGGCCTGTTAAGGTGTGGAAAGAGCTGTAGACTGCGGTGGATTAACTATTTAAGGCCTGATATTAAGAGAGGAAATTTCACAAATGAAGAGGAGGAAACTATCATTAAGCTGCATCAAATGCTGGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCAGGAAGAACTGACAATGAAATAAAAAATGTGTGGCACACCCATTTGAAGAAGAGGCTCCAACCAAATTCAGATACCAAAAGAGTATCTAAACCAAAAATCAAACGTTCTGATTCAAATTCAAGCACCATAACTCAATCAGAACCTGCTAGTCTTAATTTCCGTGAGATGGAGACTACATCAGCATGCACTAGTTCTAGTGATTTTTCATCAGTGACGGGTGTTGAAAGCAAAAACATCAAGAGTGAAGACATAGAGTCTATGGAGACAATGCCTGAAATTGATGAGAGCTTTTGGTCAGAAGCAGCAATGGATGAAACCCCTACCATGTCATCAAAATCTTTGACAATCTCAAATGAGATACAATTTAATTATGAGGAAACTTTCCAACAGAGTTATGATTCAAACTTTGACGATGGTATGGATTTCTGGTATGACATATTCATCAGAACTGAGGATCCAATAGAATTGCCACAGTTCTGA 771 0.4021 MVRAPCCEKMGLKKGPWSPEEDQILTSYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEETIIKLHQMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLQPNSDTKRVSKPKIKRSDSNSSTITQSEPASLNFREMETTSACTSSSDFSSVTGVESKNIKSEDIESMETMPEIDESFWSEAAMDETPTMSSKSLTISNEIQFNYEETFQQSYDSNFDDGMDFWYDIFIRTEDPIELPQF. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05981 256 FunFam Myb transcription factor 11 67 - -
Seca8g05981 256 CDD SANT 69 112 IPR001005 -
Seca8g05981 256 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Seca8g05981 256 MobiDBLite consensus disorder prediction 115 154 - -
Seca8g05981 256 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca8g05981 256 CDD SANT 16 61 IPR001005 -
Seca8g05981 256 Gene3D - 13 66 - -
Seca8g05981 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca8g05981 256 SMART sant 13 63 IPR001005 -
Seca8g05981 256 SMART sant 66 114 IPR001005 -
Seca8g05981 256 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca8g05981 256 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca8g05981 256 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca8g05981 256 MobiDBLite consensus disorder prediction 132 154 - -
Seca8g05981 256 FunFam Transcription factor MYB15 68 141 - -
Seca8g05981 256 Gene3D - 69 142 - -
Seca8g05981 256 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 206 - -
Seca8g05981 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca8g05981 256 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05981 Seca-Chr8 153192230 153194455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05981 1 256 MYB Transcription Factor Family AT2G31180 51.321 5.86e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g05981 Myb_DNA-binding 7.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05981 K09422 - gmx:100807569 415.231