Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05974 ATGATTCTATTGAATTTTGAATTTTGTCTGCTCTTTCCAGAAACGCGCTTTAAATTTGCACCTGCAAGTGAGAATGACCGGCAACAACTTACATGGTTTTCTCATGCCTGCAAAGGAATTCCACAGGCAAATCCAGCATTTTTGCATACTAATGTGGTTACAACTCCACCAACAGCACCACCACCACCAGCTGCAGAAGACCCAGAGTTGGCTATGGCTATCCATGCATCCCTTCAGCATGCCATGCAGGAAAGGCCAACCTTTCCTGATACCCATCCAAGCTTTGAAGCAAGCTCGTCAATCAGTGGAGTGAATACAAACAAGCATGGTTTTCTGGGTACACCGAATCTGAACACAAATGATAGTGAGTCTGTACATGAATCTGTTCCAGGTCGCAATAGTCAGCATGTCCAGAGCCATGACAATGTATCTACTGACCATACCACTAGTGGTTTGGATTTCAATCCATCAGCTCCTCCAATTGGTGATGAGATTCCAATAGATGGCCCCATTCATTATCCATCAATTGATTCAAGCCCTGTTGATATATCATCTCCAGTTGTTGAAAAGGTACCTAAAGAAGAAGGACAAAATGCTAGTGGAATTGGTTCATCATGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAATGAGGTGAAAACAAAGAAGTGGGGTTGCCCTGTATGTCGAGCTAAGATAGACCAGGTCATAAAGCTATATCATGTTTGA 774 0.4367 MILLNFEFCLLFPETRFKFAPASENDRQQLTWFSHACKGIPQANPAFLHTNVVTTPPTAPPPPAAEDPELAMAIHASLQHAMQERPTFPDTHPSFEASSSISGVNTNKHGFLGTPNLNTNDSESVHESVPGRNSQHVQSHDNVSTDHTTSGLDFNPSAPPIGDEIPIDGPIHYPSIDSSPVDISSPVVEKVPKEEGQNASGIGSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQVIKLYHV. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05974 257 ProSiteProfiles Zinc finger RING-type profile. 206 245 IPR001841 -
Seca8g05974 257 CDD RING-HC_XBAT35-like 206 255 - -
Seca8g05974 257 SUPERFAMILY RING/U-box 205 251 - -
Seca8g05974 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 256 IPR013083 -
Seca8g05974 257 SMART ring_2 206 244 IPR001841 -
Seca8g05974 257 Pfam Zinc finger, C3HC4 type (RING finger) 205 251 - -
Seca8g05974 257 MobiDBLite consensus disorder prediction 111 149 - -
Seca8g05974 257 PANTHER OS05G0521000 PROTEIN 192 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05974 Seca-Chr8 153144425 153147502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05974 196 254 C3H Transcription Factor Family AT3G06140 33.898 3.08e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05974 - - lang:109354249 341.658