Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05971 ATGGATAGATGCTGGTTTAGTAAGTACAAGTCAAAGGATAAAATGCATTCTTCAAAACACAAGGAAACTGCAGGCACTGCAAAAGAAGGGTCAAAACCCCCATCAAATGAAGAAGCACCTTCAAATGTGACCAAACAGAAAGTTGCTGCTGCAAAGCAGTACATAGAAAACCATTATAAGAAGCAGATGAAGGACCTGCAGGAGAGAAAGGAACGACGTGATATGCTAGAAAAAAAGTTGGCTGATGCTGAAGTCTCTGAGGAAGAGCAGAACAACTTGCTTAAGTATTTTGAGAAAAAGGAGAGGGAATACATGCGCCTTCAAAGGCATAAGATGGGAGCTGATGATTTTGAGCCCCTGACTATGATAGGGAAGGGTGCATTTGGAGAGGTTAGAATCTGCCGGGAGAAGGCAACTGGTCATGTATATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTCCGCAGAGGCCAGGTTGAACATGTAAAGGCGGAAAGGAACCTACTTGCAGAAGTTGACAGCAATTGCATTGTGAAGCTTTATTATTCATTTCAAGATGAAGAGTATTTATATCTAATAATGGAGTATCTACCTGGTGGTGATATGATGACATTGCTCATGCGGAAGGATATACTGACAGAAGATGAGGCCAGATTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACACAACTATATTCACAGAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGTCACATGAAATTATCAGACTTTGGATTATGTAAACCACTAGACTGCAGTAATCTTCAGGAAAAGGACTTCTCTACTGGAAGCAACAGAAGTGGAGCCCTTCAGAGCAATGGACATCCTGTTCCTGTGGCTCCCAGAAGAACTCAGCAGGAGCAACTGCAGCATTGGCAGAAAAATAGGCGAATGCTTGCATATTCTACAGTTGGGACACCTGACTATATTGCCCCTGAAGTTCTACTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCTTTGGGAGCGATAATGTATGAAATGCTAGTGGGATATCCACCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGATAGTAAATTGGAGAACTCATTTGAAATTTCCAGAAGAAGCTAAACTATCTGCAGAGGCAAAGGATCTTATTAGTAGACTACTATGTAATGTAGAACAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTATTGAATGGGACAAATTGTACCAAATGAAAGCTGCTTTTATTCCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGTGGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAGATGCTGTCATCTAAAGATGTTAACTTTGTTGGCTACACGTATAAGAACTTTGAAATCGTGAATGATGATCAGCTACCTGGAATTGCCGAATTGAAGAAGAAGAGCACAAAACCAAAACGACCATCTATTAAGACCCTATTTGGTGTTAATATACAAAGTGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCTCAACTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGGGGAACCGGTATACCCCATTTAAAATGGTTTGGAGTTGAGGGTGACTACAATGTCATGGCTATTGACCTTCTTGGACCAAGTCTTGAAGACTTGTTTAACTATTGCAATAGGAAACTCTCTCTGAAAACAGTTCTGATGCTTGCAGATCAGCTAATAAACAGAGTTGAGTACATGCACTCCCGGGGTTTTCTGCACCGTGATATAAAGCCTGACAACTTCTTAATGGGTTTAGGCCGTAAGGCAAATCAGGTATACATAATTGATTATGGCCTTGCAAAAAAGTATCGCGATCTTCAAACACATAAGCATATACCATACAGGGAAAACAAAAACCTCACTGGAACTGCTCGGTATGCAAGTGTTAATACTCATCTGGGTGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTGCTCATGTACTTTTTGAGAGGAAGTCTCCCTTGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAAAAATATGACAAGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCTTATGCAAGTCATATCCATTGGAATTCACATCTTACTTCCACTACTGCCGGTCATTGCGGTTTGAAGATAAGCCTGATTATTCATATCTTAAGAGACTCTTCAGGGACCTATTCATTCGAGAAGGCTATCAGTTTGACTACGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCTAGCTCCAGAGCTCGACCAAGTGGGAAACCAGCCATAAACCCAGGACCATCAGGGGAGAGAATAGAAAGGCCTTCAGGTGGACCAGAGATTCGGGATAGATTCTCAGGTTCAGGTGCAGTCGAAGCATTTGCAAGAAGGACTGGCACTGGGCTTGGTCTGCATGGTGATCATTCTAGGCATCGGTCTTCAGATGATGTGCCATCTTCCAAAGACGTGCAAGCTGATTCTGAGAGACCTCGGAGCTCTTCCCGAAATGGCAGTTCTTCAAAAAGGCCAGTTTTATCAAGCAGCCGACCGAGTTCTTCTGGTGAGCCTAGTGAAAACCGTTCCAGCCGAATGGTCTCAAGTAGTAGCCGACTATCTACAACTCAGAGAACTCAACCAGGTTTTGAGTCCAAAGCATCTTTTACTCGTGCTTCTGGGACAAGAGGTGGTCGTGATGATACACTCAGGAGCTTTGAACTCCTGTCAATTGGTACAGGAAAAAGGAAATGA 2862 0.42 MDRCWFSKYKSKDKMHSSKHKETAGTAKEGSKPPSNEEAPSNVTKQKVAAAKQYIENHYKKQMKDLQERKERRDMLEKKLADAEVSEEEQNNLLKYFEKKEREYMRLQRHKMGADDFEPLTMIGKGAFGEVRICREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYYSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSTGSNRSGALQSNGHPVPVAPRRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRTHLKFPEEAKLSAEAKDLISRLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEEVDNQTQPSSKSGPWRKMLSSKDVNFVGYTYKNFEIVNDDQLPGIAELKKKSTKPKRPSIKTLFGVNIQSGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPLEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRARPSGKPAINPGPSGERIERPSGGPEIRDRFSGSGAVEAFARRTGTGLGLHGDHSRHRSSDDVPSSKDVQADSERPRSSSRNGSSSKRPVLSSSRPSSSGEPSENRSSRMVSSSSRLSTTQRTQPGFESKASFTRASGTRGGRDDTLRSFELLSIGTGKRK. 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05971 953 MobiDBLite consensus disorder prediction 841 867 - -
Seca8g05971 953 CDD STKc_CK1_delta_epsilon 515 771 - -
Seca8g05971 953 FunFam Non-specific serine/threonine protein kinase 88 200 - -
Seca8g05971 953 ProSiteProfiles Protein kinase domain profile. 117 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05971 953 MobiDBLite consensus disorder prediction 868 928 - -
Seca8g05971 953 Coils Coil 59 93 - -
Seca8g05971 953 PANTHER SERINE/THREONINE-PROTEIN KINASE 580 722 - -
Seca8g05971 953 CDD MobB_NDR_LATS-like 51 112 - -
Seca8g05971 953 MobiDBLite consensus disorder prediction 1 48 - -
Seca8g05971 953 ProSiteProfiles Protein kinase domain profile. 481 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05971 953 FunFam Casein kinase I isoform alpha 516 574 - -
Seca8g05971 953 FunFam Non-specific serine/threonine protein kinase 317 436 - -
Seca8g05971 953 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Seca8g05971 953 Gene3D Transferase(Phosphotransferase) domain 1 511 803 - -
Seca8g05971 953 SUPERFAMILY Protein kinase-like (PK-like) 514 779 IPR011009 -
Seca8g05971 953 MobiDBLite consensus disorder prediction 789 823 - -
Seca8g05971 953 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Seca8g05971 953 SUPERFAMILY Protein kinase-like (PK-like) 92 470 IPR011009 -
Seca8g05971 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Seca8g05971 953 FunFam Non-specific serine/threonine protein kinase 201 268 - -
Seca8g05971 953 SMART serkin_6 117 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05971 953 MobiDBLite consensus disorder prediction 838 953 - -
Seca8g05971 953 Pfam Protein kinase domain 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05971 953 Pfam Protein kinase domain 515 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05971 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Seca8g05971 953 Gene3D Phosphorylase Kinase; domain 1 115 447 - -
Seca8g05971 953 Gene3D Transferase(Phosphotransferase) domain 1 201 436 - -
Seca8g05971 953 MobiDBLite consensus disorder prediction 1 27 - -
Seca8g05971 953 CDD STKc_NDR_like 115 482 - -
Seca8g05971 953 FunFam Casein kinase 1-like protein 498 818 - -
Seca8g05971 953 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Seca8g05971 953 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05971 Seca-Chr8 153081123 153101634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05971 3 514 AGC Kinase Gene Family AT4G14350 84.766 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Seca8g05971 Pkinase 1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05971 K08790 - gmx:100783095 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05971 8 153081123 153101634 Seca8g05971 8 153081123 153101634 ECH