Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05969 ATGGCAAACAACTTCCTTAACTCCAGTCAGTTTTATTTTCTCAACTATGTACAACGCCTTCAGCATGACAATCTGAATGAAAATTTTGTATGCAGATTGTGTAACCAAGTTTTCACCACCTATCAATCAATCATAACCCATCTCGAGTCTCATCATATTCCTCGGGAAAACCTTCCCATAGGAATTCTAAACAATATCAACGCTCAGAGAGAATTGATTCCTAGCCCTTTGCAACCTATTTTTTCTAGACCAGCATTGTTGCCAGAAACTAGAAACTTTGTTAATAGCAGGGTTTTCCAGGCACCTCCACGACAACCTATGGTGATGCCTCGACCTAGAACAAACCCATCTCCTTATGCCAACCTGCAGGTTGCTGCTTCCCAACCACTCTTTCTTCCACCACAGGTTATGCCATCTAGTGGGAGGATTGGGACCGGCGTTACTGATATGGCCCACAAAGGGCGGATGGAAGTGTCTCCAATTGATGGAACTAAGCCATATATCGACCTGTTGGATAAACCCATTGATAACAATATGGTCGATAATTTGGCTAACATCAATGATGACACATTGGATTTGGCTTTAAGGCTCTAG 594 0.4259 MANNFLNSSQFYFLNYVQRLQHDNLNENFVCRLCNQVFTTYQSIITHLESHHIPRENLPIGILNNINAQRELIPSPLQPIFSRPALLPETRNFVNSRVFQAPPRQPMVMPRPRTNPSPYANLQVAASQPLFLPPQVMPSSGRIGTGVTDMAHKGRMEVSPIDGTKPYIDLLDKPIDNNMVDNLANINDDTLDLALRL. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05969 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
Seca8g05969 197 ProSitePatterns Zinc finger C2H2 type domain signature. 31 52 IPR013087 -
Seca8g05969 197 Pfam C2H2-type zinc finger 29 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05969 Seca-Chr8 153037531 153038124 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g05969 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05969 - K09228 pvu:PHAVU_007G056300g 134.035