Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05966 ATGGCAAACAACTTCTTTAACTTCAGTCAGTTTTATTTTTTCAACTATGTACAGCGCGTTCAGCATGATAATCTGGATGAAAATTTTGTATGCAGATTGTGCAACCAAGTTTTCACCACCTATCAATCAATCATAACCCATCTCGAGTCTCATCATATGCCTCAGGAAAACCTTTCCATAGGAATACTAAACAACCCTCAGAGAGAATTGGTTCCTAGCCCTTTGCAACCTAATTTTTCTAGACCAGCATTGTTGCCGGAAACTAGAAACTTTGCTAATAGCAGGGTTTTCCAGGCACCTCCACGACCACCCGTGGTGATGCCTCAACCTAGAACAAACCCATTTCCTTATGCTAACCTGCAGGTTGCTGCTTCCCGACCATTCTTTCTTCCACCACAGGTTATGCCATCTAGTGGCGGGATTGGGATCGGTGCTACTAATATGGCCTACCAAGGGCGGATGGACGTGTCTCCAATTGATGGAACTAAGCCATATATTGACCTATTGGATAAACCCATTGATAACAATATGGTCAATAATTTGGCTAACATCAATGATGACACATTGAATTTGGATTTAAGGCTCTAG 588 0.4218 MANNFFNFSQFYFFNYVQRVQHDNLDENFVCRLCNQVFTTYQSIITHLESHHMPQENLSIGILNNPQRELVPSPLQPNFSRPALLPETRNFANSRVFQAPPRPPVVMPQPRTNPFPYANLQVAASRPFFLPPQVMPSSGGIGIGATNMAYQGRMDVSPIDGTKPYIDLLDKPIDNNMVNNLANINDDTLNLDLRL. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05966 195 Pfam C2H2-type zinc finger 29 52 - -
Seca8g05966 195 ProSitePatterns Zinc finger C2H2 type domain signature. 31 52 IPR013087 -
Seca8g05966 195 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05966 Seca-Chr8 153009403 153009990 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g05966 zf-C2H2_6 1.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05966 - K09228 pvu:PHAVU_007G056300g 127.872