Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05963 ATGGGGTTCAGATATCTTCGTCTCAAAGTCAAGGCATTTCGGCTGAAACGGTTTCTGCTACTGCTAGGACTTGGAGGAAGAAAGAGAAAGCACTTGCTAGCAAAGAAGCCTTCATGGATGATGCCAATAACACATGGTTATTATGTGGTGGAACATCATATGATCAGAGATGGTTCTGATGGCTCAGACCTTGATTCAGTTGTGGTACAAAGAGAGCAAATTGGTCATACAGAATTGTGGTATTTTGGAATCTTTGATGCACTAATTGGAGAAAGAGTCACCAAATACATGCAATCTCATTTCTTTGCCAAGAAGCTTCAAGAGGCTCATATAAGGAGAAAGAGCAAAGATACACTGAAGAGAGCTTATCTTGGTGTAAGGACAAAGATCAGAGAGGAACACAGATCAGAAGAGACATGCAGAATGGGTTCAGCATCTGTTATGGTAATCAATGGAGAACAACTTGTAATAGCTAACATGGGAGATTATAGAACTGTTGTTTGTAGAGATGGCATAGCTTATCAAACAACTGGCACATACCAACAATCAGCCAAAAGACATTGGTCTCGCAGACTCTTTGCAGGAAATGCAATAGGTACAAGGCATTCTAGAGGCTCTGAACTTGTCGTAAGAGGTGAAAGGGTTGATTCTGATACTGAATTTTTTATATTAGCAAGCAATGGCATATGGGAGGGGAAAAAAAGCCTAATAGCAAGTGAACCTCCATATATTTGTAGGTGA 741 0.4035 MGFRYLRLKVKAFRLKRFLLLLGLGGRKRKHLLAKKPSWMMPITHGYYVVEHHMIRDGSDGSDLDSVVVQREQIGHTELWYFGIFDALIGERVTKYMQSHFFAKKLQEAHIRRKSKDTLKRAYLGVRTKIREEHRSEETCRMGSASVMVINGEQLVIANMGDYRTVVCRDGIAYQTTGTYQQSAKRHWSRRLFAGNAIGTRHSRGSELVVRGERVDSDTEFFILASNGIWEGKKSLIASEPPYICR. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05963 246 Gene3D - 50 238 IPR036457 -
Seca8g05963 246 SMART PP2C_4 51 246 IPR001932 -
Seca8g05963 246 ProSiteProfiles PPM-type phosphatase domain profile. 44 246 IPR001932 -
Seca8g05963 246 Pfam Protein phosphatase 2C 81 184 IPR001932 -
Seca8g05963 246 PANTHER PROTEIN PHOSPHATASE 45 231 IPR015655 GO:0004722|GO:0006470
Seca8g05963 246 SUPERFAMILY PP2C-like 66 231 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05963 Seca-Chr8 152972691 152975324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05963 1 235 PP2C-type Phosphatase Gene Family AT3G23360 43.333 2.24e-55 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05963 K19704 - gmx:100785227 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05963 8 152972691 152975324 Seca8g05963 8 152972691 152975324 ECH