Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05947 ATGAGAGCTAAGAGTTTGACAAGTAAGAGGGAGTTTAGCATTAGAGGGAAATTGATAAAGATGATCAAATGTGTATGGTCGAGGGAACAGTTAAGTGTAGATGAAAGAAGTTATTCATCAGAGTCCCTGGCAACCAGGGATTATTCAGCAAGTGGTTATTCATCTCGTCCTGGTGACACCGATACAAAGTTGGACAATAGTAACATTGAAGAAGCAGAGTCATCTCTTCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCCTTGTTAGGAAGACTTGAGTATCAGAAAGGTAATACCGAAGCTGCACTTCATGTATTTGAAGGAATAGATATTTCTGCTGTAGTTCCCAAGATGAAAATTTCTATATCTAGAAGATGTGAACCCAATAAACGCCGTTCACAAAGTGATACAGTGCCTCCTATGTCAATGCATGCTGTTAGTTTACTTCTTGAAGCTGTTTTTCTCAAGGCTAAATCATTGCAGACTCTTGGAAGGTTTCAAGATGCTGCTCAATCATGCAAAGCTATTTTAGACACTGTTGAATCTGCATTACCAGAAGGCTGGCCTGAAAACTTTGTTTCAGACTGTAAATTACATGAGACTGTAACAAATGCTGTAGAACTGCTTCCTGAGTTGTGGAAGCTTGCTGGCTCTCCTCAAGATGTTATCTCATCATTTAGGAGGGCCTTGCTTTATAATTGGAATCTTGACAGTGAAGCCACTGCAAGAATACAAAAGGAATTTGCTTTGTTTCTTTTGTACAGTGGTTGTGAAGCAAGCCCTCCTGCTCTCCGCTCTCAGTTGGATGGTTCCTTTGTGCCAAGAAACAACATAGAAGAGGCTGTTCTTCTGCTTCTGATTCTGCTGAGAAAATCTGTTCTTGGAAGCATTGTTTGGGACCCTTCAATAATTGATCACCTTTCTTTTGCTGTAAGTGTCTCTGGGGAATTCATGACTCTGGCTCAACAGATAGAGGAGTTGCTTCCAGAAACCATGGAGAGTAAAGAGCGGTACTATACTCTAGCACTTTGTTACTGTGGGGAAGGTGAGCATATGATTGCTTTGGATCTTTTGAGGAACTTTTTGAATAATAGAGAGAACTTGGACTGCATACAAGAATTACTTCTAGCTTCCAAAATTTGTGCAGACAACATGGTTTGTGTTGAAGATGGAATCAAATATTCTTGCAAAGCCATTTCTCAGTTGTATGGAAAATGCATGCAAGTGGTAGCTATTGCAAATTGTTTACTAGGTGTTCTACTGTCAGCAAAATCCAGGTCAGTTGGTTCTGAATCAGAGAAGGCTTTGATGCAATCTGAAGCACTCAGTGCTCTAAAAGCTGCTGAGAGAATGATGAGGGAAAATGATCCATACATTGTCCTTCATCTTTGTCTAGAATATGCTGAGCAGAGGAAGTTGAGCATTGCTTTTTATCATGCAAAGAAACTGGTTAAGCTGGAGGGTGGATCTAGTATTACTGGATATATATTACTAGCTAAGATTTTATCAGCTCAAAAAAAGTTTGTTGATGCAGAGATTGTTATTGATGCTGCATTAGATCAAAGTGGAAAATGGGATCAAGGAGAACTGTTGAGAACTAAAGCTAAACTACGGATTGCACAGGGAAAATTAAAGAATGCAGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAAGTCCAGAATAAAAGTTTAGGCACTGCAAATAAGGTTGTGAAGGTATGCATCATTGAGTATAAGGGAAACCGTGACAGAAGACTGGAAATGGAAATATGGCATGATTTAGCCAATGTGTACACAGCCTTATCACAGTGGCAGGATGCTGAAGTTTGTCTTGCAAAATCTCAAGCTATTAATCCCTACTCTGCTTCTAGATGGCATTCCACTGGTATATTGCTTATCTTCTTGTATTTTCTCCCTAACTTAGCATTCAACTTCAACCTTTATAGGTTCTATATATTTGTCTAG 1974 0.3926 MRAKSLTSKREFSIRGKLIKMIKCVWSREQLSVDERSYSSESLATRDYSASGYSSRPGDTDTKLDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNTEAALHVFEGIDISAVVPKMKISISRRCEPNKRRSQSDTVPPMSMHAVSLLLEAVFLKAKSLQTLGRFQDAAQSCKAILDTVESALPEGWPENFVSDCKLHETVTNAVELLPELWKLAGSPQDVISSFRRALLYNWNLDSEATARIQKEFALFLLYSGCEASPPALRSQLDGSFVPRNNIEEAVLLLLILLRKSVLGSIVWDPSIIDHLSFAVSVSGEFMTLAQQIEELLPETMESKERYYTLALCYCGEGEHMIALDLLRNFLNNRENLDCIQELLLASKICADNMVCVEDGIKYSCKAISQLYGKCMQVVAIANCLLGVLLSAKSRSVGSESEKALMQSEALSALKAAERMMRENDPYIVLHLCLEYAEQRKLSIAFYHAKKLVKLEGGSSITGYILLAKILSAQKKFVDAEIVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSLGTANKVVKVCIIEYKGNRDRRLEMEIWHDLANVYTALSQWQDAEVCLAKSQAINPYSASRWHSTGILLIFLYFLPNLAFNFNLYRFYIFV. 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05947 657 SUPERFAMILY TPR-like 496 636 IPR011990 GO:0005515
Seca8g05947 657 SMART tpr_5 494 527 IPR019734 GO:0005515
Seca8g05947 657 SMART tpr_5 591 624 IPR019734 GO:0005515
Seca8g05947 657 SMART tpr_5 152 185 IPR019734 GO:0005515
Seca8g05947 657 MobiDBLite consensus disorder prediction 48 62 - -
Seca8g05947 657 MobiDBLite consensus disorder prediction 48 67 - -
Seca8g05947 657 PANTHER PROTEIN NPG1 22 635 IPR043376 -
Seca8g05947 657 Gene3D Tetratricopeptide repeat domain 59 638 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05947 Seca-Chr8 152756137 152760310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05947 22 634 Calmodulin-binding Proteins AT4G28600 53.065 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05947 K21843 - gmx:100789469 1050.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05947 8 152756137 152760310 Seca8g05947 8 152756137 152760310 ECH