Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05944 ATGAATTCAAGTGAAGAAATTAGTGATCATGAAACTAGTAGTGCAGGAACAAAACGCTGTTATGAGTGCACATTCTGCAAGAGAGGCTTCACAAATGCTCAAGCTTTAGGGGGTCATATGAATATCCATAGAAAAGACAGAGCCAAGGCCAAGCATAACACACCAAACTCTTCACTTCAAAACAAATTCACAAATGATGAATCCATGGCCCTTCCTTTTGTTTCATCAGAAATTTCAAACCAACCGACCATAAGGCCGCATAATCAACCTGATCAACCTGCACCTGGGCATGCCTTTCAATATGAGTTTCATCATAACCAAAGGTCTCACTCTCACTCTCACCTTATGTATCTCAACCAAGAGCTTCAGGGTGCCAATTTGAGTCTCCGAATTGGTCCAAGTGATCATGTCGATACTCAGAAAGATAATAATGAAGTGGACTTGGAGCTAAGACTTGGTCATGCTCCATAA 471 0.4119 MNSSEEISDHETSSAGTKRCYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHNTPNSSLQNKFTNDESMALPFVSSEISNQPTIRPHNQPDQPAPGHAFQYEFHHNQRSHSHSHLMYLNQELQGANLSLRIGPSDHVDTQKDNNEVDLELRLGHAP. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05944 156 Gene3D Classic Zinc Finger 2 77 - -
Seca8g05944 156 SMART c2h2final6 21 43 IPR013087 -
Seca8g05944 156 ProSitePatterns Zinc finger C2H2 type domain signature. 23 43 IPR013087 -
Seca8g05944 156 SUPERFAMILY beta-beta-alpha zinc fingers 18 47 IPR036236 -
Seca8g05944 156 ProSiteProfiles Zinc finger C2H2 type domain profile. 21 48 IPR013087 -
Seca8g05944 156 PANTHER OS07G0101800 PROTEIN 13 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05944 Seca-Chr8 152701211 152701681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05944 21 153 C2H2 Transcription Factor Family AT5G43540 35.507 1.33e-16 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g05944 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05944 - - gmx:102665558 154.066