Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05916 ATGAGTGAATACCTCAAGCGAGACTACGTCGTTTTGGGAGAGATCGGCCAGGGAAGATTCGGCACCGTTTTCCGGTGCTCTTCCGTGGACTCCGGCGACTCCTTTGCCGTTAAATCCATCGACAAATTGGCCTTAACCGCCGTAGGAGACTCCTTAGACACTCAATGCCTCTTAACAGAGCCCAAAATCCTTCAACTTCTCTCCTCTCACCCTCACATAGTTCAACTCCACAACCTCTACGAGGACGACACGCACCTCCACATGGTTCTTGACCTCTGTTACGAATCGGACTTTCACAATCGGGTCATGTCCGAATCCGAAGCCGCATCCGTCATGTTCCAGCTCATGCAAGCCGTGGCTCACTGCCACCGCCTCGGCGTGGCGCACCGTGACATAAAACCCGATAACATTCTCTTTGATGAGGAGAATCGGCTCAAGCTAGCCGATCTTGGTTCGGCTGAGGTATTCAAGGAGGGGGAACTGATGAGTGGGGTGGTGGGTACGCCGCATTATGTGGCGCCGGAGGTACTCGCTGGAAGGGAATACAACGAGAAGGTTGATGTGTGGAGTGCTGGTGTCGTTTTGTATGGAATGTTGGCTGGGTTTCTGCCGTTTCGAGGGGATTCGCCGGTGGAGATTTTTGAGGCTGTGCTTCGAGCCAATTTGAGGTTCCCGAGCAGAGCTTTTTGCTCTGTGTCACCGGCGGCCAAGGATCTGCTTCGTAGAATGCTCTGTAAGGACGTTTCTAGAAGGTTCTCTGCAGAACAACTTCTCAGTGGCACCCATGGTTTAGCATGGCTCAACAGAACATTCCAACAGGGTGAGTCAGTGATTCATCTTGACAGAGAAGATATGATCTTATATGCGTGGAGGTGGTTTCTCTGTATATATTTGCGGCACCCTATGCCTGGTAGAGGCTGA 921 0.519 MSEYLKRDYVVLGEIGQGRFGTVFRCSSVDSGDSFAVKSIDKLALTAVGDSLDTQCLLTEPKILQLLSSHPHIVQLHNLYEDDTHLHMVLDLCYESDFHNRVMSESEAASVMFQLMQAVAHCHRLGVAHRDIKPDNILFDEENRLKLADLGSAEVFKEGELMSGVVGTPHYVAPEVLAGREYNEKVDVWSAGVVLYGMLAGFLPFRGDSPVEIFEAVLRANLRFPSRAFCSVSPAAKDLLRRMLCKDVSRRFSAEQLLSGTHGLAWLNRTFQQGESVIHLDREDMILYAWRWFLCIYLRHPMPGRG. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05916 306 FunFam Maternal embryonic leucine zipper kinase 1 289 - -
Seca8g05916 306 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Seca8g05916 306 Pfam Protein kinase domain 9 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05916 306 ProSiteProfiles Protein kinase domain profile. 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05916 306 Gene3D Transferase(Phosphotransferase) domain 1 93 284 - -
Seca8g05916 306 Coils Coil 304 306 - -
Seca8g05916 306 CDD STKc_CAMK 8 259 - -
Seca8g05916 306 SMART serkin_6 9 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05916 306 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Seca8g05916 306 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 270 - -
Seca8g05916 306 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Seca8g05916 306 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05916 Seca-Chr8 152258433 152259995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05916 3 259 EF-hand Containing Proteins AT1G50700 39.623 1.11e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca8g05916 Pkinase 3.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05916 K08794 - gmx:547731 457.218