Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05912 ATGGAACGTGGGGTTCTTGATGGTATCATCAATAGGCTGCTTGAAGTCAGAGGCAGACATGGGAAGCAGGTCCAGCTTTCTGAAGCTGAGATCAAGCAGCTTTGTCTTGTCTCCAAAGACATCTTCTTGAAACAACCTAACCTCTTGAAACTCGAAGCACCAATTAAGATCTGTGGTGATATCCATGGTCAATATTCCGACCTTCTGAGACTTTTTGAGTTTGGTGGATTCCCTCCTCGTTCCAAGTACTTATTTTTAGGGGATTATGTTGATCGTGGAAAGCAAAGTCTAGAGACAATATGTCTTCTTCTGGCATATAAAATAAAATATCCTGAAAATTTTTTCCTTTTAAGGGGGAACCATGAATGTGCTTCCATAAACCGTATCTATGGATTTTATGATGAATGCAAAAGGAGATTCAATGTCAGGCTTTGGAAACAGTTTACAGATTGTTTCAACTGCTTGCCTGTAGCAGCTCTCATTGATGAAAAGATAATATGTATGCATGGTGGACTCTCTCCTGAATTGCACAATCTAAATCAGATAAGGAGTTTGCCACGTCCTTGTCAAGTCCCTGAAAATGGTCTATTATGTGATCTCCTTTGGTCTGATCCTAGTAGTGACATTCAGGGTTGGGGAGAAAATGAACGTGGAGTTTCCTATACTTTTGGTGTTGACAGGGTCAAAGAATTTCTTCAAAAACATGATCTTGATTTGATTTGCAGAGCACACCAGGTTTCAATTAGTCCTTTTAAACAAGTTGTGGAAGATGGATATGAATTCTTTGCTAATAGACAACTTGTAACTATATTTTCAGCACCTAATTACTGTGGAGAGTTTGACAATGCTGGTGCTATGATGAGTGTGGATGAGACACTTGTGTGCTCTTTTCAAATATTGAAGCCTCTAGATAAAAGGCCTAAGTTTAGCTTTGGGAGCATGACTTCAATTAAGCACAATTCTCCAACAAAAAACAAGGTATTTTGA 987 0.3891 MERGVLDGIINRLLEVRGRHGKQVQLSEAEIKQLCLVSKDIFLKQPNLLKLEAPIKICGDIHGQYSDLLRLFEFGGFPPRSKYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKQFTDCFNCLPVAALIDEKIICMHGGLSPELHNLNQIRSLPRPCQVPENGLLCDLLWSDPSSDIQGWGENERGVSYTFGVDRVKEFLQKHDLDLICRAHQVSISPFKQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLVCSFQILKPLDKRPKFSFGSMTSIKHNSPTKNKVF. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05912 328 CDD MPP_PP1_PPKL 5 302 - -
Seca8g05912 328 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Seca8g05912 328 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Seca8g05912 328 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Seca8g05912 328 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Seca8g05912 328 PRINTS Serine/threonine phosphatase family signature 266 282 IPR006186 GO:0016787
Seca8g05912 328 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Seca8g05912 328 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Seca8g05912 328 Pfam Calcineurin-like phosphoesterase 54 245 IPR004843 GO:0016787
Seca8g05912 328 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Seca8g05912 328 SMART pp2a_7 26 304 IPR006186 GO:0016787
Seca8g05912 328 SUPERFAMILY Metallo-dependent phosphatases 18 306 IPR029052 -
Seca8g05912 328 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 10 306 - -
Seca8g05912 328 FunFam Serine/threonine-protein phosphatase 1 311 - -
Seca8g05912 328 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Seca8g05912 328 Gene3D - 2 313 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05912 Seca-Chr8 152185901 152189536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05912 33 237 Calmodulin-binding Proteins AT5G63870 32.520 1.69e-30 115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04311 8 123091210 123095024 Seca8g05912 8 152185901 152189536 ECH
Seca8g05912 8 152185901 152189536 Seca8g05912 8 152185901 152189536 ECH