Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05910 ATGGATTCACCCTTAACCTTGAACTCTTCCAATTCAGAATTCTCCTCAGAATCCTCATCCTTCGAGTTCAATTACCTTCCTTTCAACGAGAACGATCCTGAGGAGATGCTTCTCTATGGCATGATCACCGACGCCAATAGTAACACCCTCTTCAACCAGTCCTTTGATACAAGCAACAGAGTGAAGGAAGAGGAGGTGAGTTCTGAAGAAAATGGCGCCAGGAAGGAGAAGTCGTACCGAGGTGTTAGAAGACGGCCATGGGGTAAGTTTGCAGCAGAGATAAGGGATTCAACGAGACATGGGATAAGGGTTTGGTTGGGGACTTTTGATAGTGCTGAAGCTGCGGCTTTGGCTTATGATCAAGCTGCTTTTTCTATGAGGGGTTCTGCGGCTATACTCAATTTCCCTGTTGAAATTGTGAGGGAATCGTTAAAGGAGATGAATTGTGGTGGGCATGGTGTTGGTGAAGCAGGGTGTTCCCCTGTTGTTGCTCTGAAGAGGAAGCACTCGTTGAGGAGGAAAATTGGTGTCAAGAAGAATAATAAAGAAAGAGATGTTGTTATTAGGAATAAAAGGATGGACAATGCTGTAGTGTTTGAAGATCTTGGTGCTGATTATTTAGAACAATTGTTGATGTCTTCTGATGAAATCCCTAGTGCTTGGTGA 666 0.4414 MDSPLTLNSSNSEFSSESSSFEFNYLPFNENDPEEMLLYGMITDANSNTLFNQSFDTSNRVKEEEVSSEENGARKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPVEIVRESLKEMNCGGHGVGEAGCSPVVALKRKHSLRRKIGVKKNNKERDVVIRNKRMDNAVVFEDLGADYLEQLLMSSDEIPSAW. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05910 221 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Seca8g05910 221 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Seca8g05910 221 CDD AP2 77 137 IPR001471 GO:0003700|GO:0006355
Seca8g05910 221 MobiDBLite consensus disorder prediction 56 78 - -
Seca8g05910 221 FunFam Ethylene-responsive transcription factor 2 77 138 - -
Seca8g05910 221 SUPERFAMILY DNA-binding domain 78 138 IPR016177 GO:0003677
Seca8g05910 221 Gene3D AP2/ERF domain 77 138 IPR036955 GO:0003700|GO:0006355
Seca8g05910 221 ProSiteProfiles AP2/ERF domain profile. 78 136 IPR001471 GO:0003700|GO:0006355
Seca8g05910 221 PANTHER DNA-BINDING DOMAIN 40 212 IPR044808 GO:0003700|GO:0009873
Seca8g05910 221 SMART rav1_2 78 142 IPR001471 GO:0003700|GO:0006355
Seca8g05910 221 MobiDBLite consensus disorder prediction 58 77 - -
Seca8g05910 221 Pfam AP2 domain 78 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05910 Seca-Chr8 152078675 152079340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05910 26 215 AP2-EREBP Transcription Factor Family AT3G23240 62.105 1.54e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g05910 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05910 K14516 - gmx:100790598 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04318 8 123166200 123166832 Seca8g05910 8 152078675 152079340 ECH
Seca8g05638 8 148107576 148108256 Seca8g05910 8 152078675 152079340 ECH
Seca2g04371 2 128659716 128660411 Seca8g05910 8 152078675 152079340 ECH
Seca8g05910 8 152078675 152079340 Seca8g05910 8 152078675 152079340 ECH