Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05909 ATGGAGGAGCATCACAAGGGGAAGCATGGAAAGGAGGAGAAAGGAAGGGAAGAGGTCCGGTACCGAGGTGTCCGGCGGCGGCCATGGGGGAAGTATGCGGCGGAGATAAGAGATCCATCTAAACAAGGGACAAGGCTGTGGTTGGGGACATTTGATACTGCTGAAGAGGCTGCTAGAGCTTATGATAGAGCAGCTTTTAATTTGAGGGGTCATCTTGCAATTCTGAATTTTCCTAATGAGTACTATTCTCAAATAAGGGGCTCACCACCATATCCACCTCATTTGGCATCTCCTTCTTCTGCCAGTGGAAGTTCTTCTCAGAGGCATGTCTTTGAGTTTGAGTGTTTGGATGATAAGGTGTTGGAGGAACTTCTTGAGTCAGAGGAGCAGAAGAAGAAAAAGAAGGGAGATTGA 414 0.4758 MEEHHKGKHGKEEKGREEVRYRGVRRRPWGKYAAEIRDPSKQGTRLWLGTFDTAEEAARAYDRAAFNLRGHLAILNFPNEYYSQIRGSPPYPPHLASPSSASGSSSQRHVFEFECLDDKVLEELLESEEQKKKKKGD. 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05909 137 ProSiteProfiles AP2/ERF domain profile. 20 78 IPR001471 GO:0003700|GO:0006355
Seca8g05909 137 Pfam AP2 domain 20 71 IPR001471 GO:0003700|GO:0006355
Seca8g05909 137 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Seca8g05909 137 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Seca8g05909 137 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Seca8g05909 137 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Seca8g05909 137 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Seca8g05909 137 SMART rav1_2 20 84 IPR001471 GO:0003700|GO:0006355
Seca8g05909 137 FunFam Ethylene-responsive transcription factor 2 19 79 - -
Seca8g05909 137 PANTHER DNA-BINDING DOMAIN 10 131 IPR044808 GO:0003700|GO:0009873
Seca8g05909 137 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05909 Seca-Chr8 152005598 152006011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05909 18 132 AP2-EREBP Transcription Factor Family AT3G23230 68.293 1.55e-52 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g05909 AP2 3.4e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05909 - - gmx:100793703 142.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05909 8 152005598 152006011 Seca8g05909 8 152005598 152006011 ECH