Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05908 ATGGATGAAGAAGGATCAAGGGGAAGGGCCAAGGAGGACAGCGGAGATGTCAGGTACCGCGGTGTCCGACGGAGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGTGACTCGACTCGGCAGGGTCAGAGGGTGTGGCTGGGAACATTCAACACAGCTGAAGAAGCAGCCAGAGCATATGACAGAGCTGCTTATGCTATGAGAGGTTCATTTGCAATCCTTAACTTCCCGAATGAATACTCTATGCCAGCTGGTGCCACTTCATCTTCTTCTTCTTCCTCTTCAAGGAATGCAAATGTAGAAGGGAGTGGAAGACAAGTGTTTGAGTTTGAGTACTTGGATGACAAAGTGTTGGAGGAGCTTCTTGGATGTGAAGAGAAGAAGAAGAATAAGGGATCCTGA 399 0.4987 MDEEGSRGRAKEDSGDVRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEEAARAYDRAAYAMRGSFAILNFPNEYSMPAGATSSSSSSSSRNANVEGSGRQVFEFEYLDDKVLEELLGCEEKKKNKGS. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05908 132 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Seca8g05908 132 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Seca8g05908 132 PANTHER DNA-BINDING DOMAIN 13 125 IPR044808 GO:0003700|GO:0009873
Seca8g05908 132 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Seca8g05908 132 MobiDBLite consensus disorder prediction 81 101 - -
Seca8g05908 132 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Seca8g05908 132 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Seca8g05908 132 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Seca8g05908 132 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Seca8g05908 132 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Seca8g05908 132 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05908 Seca-Chr8 151984848 151985246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05908 13 128 AP2-EREBP Transcription Factor Family AT3G23230 64.286 1.28e-45 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g05908 AP2 2.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05908 - - gmx:100775830 194.126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05908 8 151984848 151985246 Seca8g05908 8 151984848 151985246 ECH