Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05906 ATGGATCTTGTAAGCAGAAGATACTTGATCTATGTGTCACAACATGGGTCACAAGCACTTTCTCCAATCACAAGTCCAGGGAATTCAATCTTTCATCCTCATCTTCATCCTTCAAGCACCAGTTTTCCCATCATTGCAATTGCTATAATAGGAATAATGGCTACTGCTTTCTTGCTGGTGAGCTACTACATCTTTGTGATCAAATGCTGCCTCAATTGGCACCGTATTGATATCCTAAGACGTTTCTCTCCATCAAGGAGGCGTGAAGATCCATCAGCAATGTACTCACCAGGCACAGAACTTCGTGGATTAGATGAGGCAGTGATCCGGTTAATCCCTGTGATTCAATACAAAACAGAAGTGAATAGAGACAGTACTAATGGAGAAAGAAGCTTCTGTGAATGTGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAACTCAGGATTATACCAAATTGCAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCAAATTGTCCACTTTGTAGAACAAGTATTTCCTTGACAAGTAGATTCCATATTGATCAGCTTCTCAATCAAAGGCCCTCTTTTTACCCTCATGGTCAAAACCCACCTGGTGAAAACCTCATTGGTGGTGATGAAGATTTTGTTGTGATTGAACTGGGTAATGATCATGATAGAGGCCAGAATTTACAAGAAAGGGGTAATGCTATGGAGTTACCAATACCAACATGTCCTATTAGTCCTTCACCAAAGAAGTTGGAAAAGAAAACAAGGAAGCTGCATAAAGTGACAAGCATGGGAGATGAGTGTATTGATATTAGAGCCAAAGATGAGCAGTTTTCAGTTCAACCCATCAGAAGGTCTTTCTCAATGGATTCATCAGGGGATAGACAATTCTATTTAGCAGTTCAAGAAGCTCTGCAGCAGCACAAGAGGCAAATTAATGAAGTCAGCTCCATTGAAGGCTGCAGTGGTAGTGGTAGAGCCAAAAAATCATTCTTTTCCTTTGGACATGGAAGTAGATCCAGAAGTTCTGTTCAACCTGTTTATTTGGACCCCTGA 1068 0.4064 MDLVSRRYLIYVSQHGSQALSPITSPGNSIFHPHLHPSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSRRREDPSAMYSPGTELRGLDEAVIRLIPVIQYKTEVNRDSTNGERSFCECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSRFHIDQLLNQRPSFYPHGQNPPGENLIGGDEDFVVIELGNDHDRGQNLQERGNAMELPIPTCPISPSPKKLEKKTRKLHKVTSMGDECIDIRAKDEQFSVQPIRRSFSMDSSGDRQFYLAVQEALQQHKRQINEVSSIEGCSGSGRAKKSFFSFGHGSRSRSSVQPVYLDP. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05906 355 CDD RING-H2_EL5-like 134 177 - -
Seca8g05906 355 PANTHER RING-H2 FINGER PROTEIN ATL16 31 351 IPR044600 GO:0016567|GO:0016740
Seca8g05906 355 Pfam Ring finger domain 134 177 IPR001841 -
Seca8g05906 355 SMART ring_2 135 176 IPR001841 -
Seca8g05906 355 FunFam E3 ubiquitin-protein ligase ATL6 94 183 - -
Seca8g05906 355 SUPERFAMILY RING/U-box 134 183 - -
Seca8g05906 355 MobiDBLite consensus disorder prediction 336 355 - -
Seca8g05906 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 182 IPR013083 -
Seca8g05906 355 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05906 Seca-Chr8 151956875 151957942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05906 33 355 C3H Transcription Factor Family AT1G04360 53.889 2.64e-105 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05906 - - gmx:100775286 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05906 8 151956875 151957942 Seca8g05906 8 151956875 151957942 ECH