Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05891 ATGGAGGTAGCTGGAGGAGCTGATATAGCTGACAGTGTAGCCCAATTTGCAAGGAGGCGTCAGCGTGGTGTTTGTGTCCTCAGTGGTAGTGGCTCTGTTGCAAACGTTACTCTAAGACAACCAGCAGCACCTGGTGCTGTAGTAGCACTTCATGGAAGGTTTGAGATTCTATCCCTAACTGGGACATTTCTTCCAGGACCTTCCCCTCCAGGGTCTACAGGACTCACAGTGTATCTTGCTGGAGGACAGGGTCAGGTTGTTGGAGGGAGTGTGGTTGGGTCTTTAGTTGCAGCAGGACCTGTTATGGTCATTGCTGCAACTTTTGCTAATGCAACATATGAGAGACTACCACTGGATGATGAGGATGAAGGGCCTAGTTCTGCTGTGCAAGGAGGCGCTGGATCGCCGCCGGCGATGGTGGCGGGGATTGGAGGAAGTGGTACTGCTCATCATCATCAGTTGCAGCAGCAGCCTGGAGGAGGGCTTCCAGATCCATCCTCTCTGCCTTTGTATAATTTACCACCGAATTTGTTGCCTAATGGAGGAGGACAGGTGGGACATGAGGCTCTTGCTTGGGCTCATGGAAGACAACCTTACTGA 600 0.5183 MEVAGGADIADSVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGTFLPGPSPPGSTGLTVYLAGGQGQVVGGSVVGSLVAAGPVMVIAATFANATYERLPLDDEDEGPSSAVQGGAGSPPAMVAGIGGSGTAHHHQLQQQPGGGLPDPSSLPLYNLPPNLLPNGGGQVGHEALAWAHGRQPY. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05891 199 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 109 IPR005175 -
Seca8g05891 199 CDD DUF296 2 80 IPR005175 -
Seca8g05891 199 Gene3D - 1 124 - -
Seca8g05891 199 PIRSF ESCAROLA 1 199 IPR014476 GO:0003680
Seca8g05891 199 ProSiteProfiles PPC domain profile profile. 1 131 IPR005175 -
Seca8g05891 199 MobiDBLite consensus disorder prediction 117 175 - -
Seca8g05891 199 FunFam AT-hook motif nuclear-localized protein 1 123 - -
Seca8g05891 199 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 121 - -
Seca8g05891 199 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 194 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05891 Seca-Chr8 151815606 151817401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05891 1 199 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 62.871 1.89e-71 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05891 - - gmx:100798994 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05891 8 151815606 151817401 Seca8g05891 8 151815606 151817401 ECH