Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05888 ATGTTAAAAGCAGTAGCATCTGGGGTGTTGATTACCTCTATCCTCATATGTGCATCTGCAACAGATAATGGATTTCCTAGATGTAACTGTGATGATGAGGCTAGCTTGTGGACTATTGAGAGCATTCTGGAGTGTCAGAGAGTTGGGGATTTCTTGATTGCTGTGGCCTACTTCTCCATCCCTATTGAGCTGCTTTATTTTATCAGTTGCTCAAATGTCCCATTCAAATGGGTCCTTGTTCAGTTCATTGCCTTCATTGTACTGTGTGGATTGACACATTTGCTGAATGGGTGGACTTATGGCCCTCACACTTTTCAGCTTATGGTGGCACTTACTGTCTTTAAAATTCTCACTGCCTTGGTATCTTGTGCCACTGCTATAACTCTCATCACTCTAATTCCTTTACTTCTTAAAGTGAAGGTCAGAGAATTCATGCTGAAGAAAAAGACATGGGATCTTGGACGGGAGGTTGGTATTATTATGAAACAGAAGGAGGCTGCAATGCATGTAAGAATGCTTACTCAAGAGATTCGCAAGTCACTTGATAGACATACCATTCTGTACACCACTTTGGTGGAGCTGTCTAAAACACTTGGCTTGCAAAATTGTGCTGTGTGGATGCCTAATGTTGAGAAGACAGAGGTGAACCTCACTCATGAATTGAACGAGAGGAATTTTAATTGTTCCATACCCATTACTGATCCAGACGTTGTAAGAATTAAGGGAAGTGATGGAGTGAATATACTTAATTCTGATTCAGAACTTGCTGTTGCGAGTAGTGGAGGTTCTGGTGAGGCAGGACCTGTTGCTGCAATCCGAATGCCAATGCTACGGGTTTGTAATTTCAAAGGAGGAACGCCTGAGCTAAGGCAGACATGTTATGCAATATTGGTCTTGATTCTTCCTATTGGAGAGCCTAGATCTTGGAGTGGTCAGGAGCTGGAGATAATTAAGGTGGTTGCTGATCAGGTCGCAGTGGCTCTATCTCATGCTGCAATTCTTGAAGAGTCCCAACTTATGAGAGAGAAGTTGGAAGAGAGAAATCGAGCCTTGCAACAGGCAAAACGAAATGCTATGATGGCAAGCCAGGCAAGAAACTCATTTCAGAAAGTCATGAGTGATGGAATGAGGAGACCAATGCACTCAATTTTGGGATTGCTGTCAACAATACAAGATGATAATTTAAAGAATGAACAGAAACTTATTGTGGATGCAATGCTAAGGACCAGCAATGTCCTATCAAACTTGATAAATGATGCCATGGACAACTCTACAAAGGATGATGGAAGATTTCCATTGGAGATAAGGTCTTTTGGGTTACATTCCATGATAAAGGAAGCAGCTTGCCTTGCTAAGTGCATGTGTGTTTATAGGGGCTTTGGATTTTTGATTGAGGTTGATAAGTCTTTACCTGACAATGTTATGGGTGATGAGAGGAGGGTTTTTCAGGTGATTTTGCATATGGTTGGGAACCTACTGGATCGCAACCACGGGGAAGGGATCCTTGTATTTCGGGTTTTTGCCGAAACTGGAAGTCAGGGAAGGAATGACAAAGGGTGGACATCCTGGAGACCGAGCTCATCCAGTGGTGATGTAAATATTAGATTTGAGTTAGGGATCAACAGTAGTGATTCTGAAGTGGTGAGCTCAGTTTCTTCAGGGCTTGGGGGTAGAAAATATACCAGTGATAGGGTTGAGGACAGATTGAGCTTCAGTATTTGCAAGAGGATAGTCCAGTTGATGCAAGGGAACATATGGTTGGTACCATATTCTCATGGTTTTCCTCAAAGCATGACACTTCTTCTTCGGTTTCAATTACGACCCTCCATTGCTATTGCCATCTCTGAACCTGGAGAATCTTCGGAACGCAGCAATTCCAATTCAATGTTGAGAGGTCTGCAAGTTCTGTTAGTTGACAATGATGATGTAAATAGAGCAGTGACCCAAAAATTGCTTCAGAGACTAGGTTGTGTTGTAACTTCAGTCTCTTCAGGATTTGAATGCCTTACTGTCATTGGACCTGCTGGATCTTCCATTCAAGTCATTCTTTTGGCTCTTCACACGCCTGATTTAGATGGCTTTGAAGTTGCCACAAGGATTCGCAAGTTTAGAAGTGGAAATTGGCCTTTGATTGTTGCTTTGACTGCAAGTGCTGAAGAAGATTTGTGGGAAAGATGCATGCAAATAGGTATTAATGGAGTTATCAGAAAACCAGTTTTGTTGCAAGGAATTGCTAGTGAGCTCAGAAGAATCTTGATGCAGGGAAATAATGTCCTGTGA 2280 0.4219 MLKAVASGVLITSILICASATDNGFPRCNCDDEASLWTIESILECQRVGDFLIAVAYFSIPIELLYFISCSNVPFKWVLVQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTVFKILTALVSCATAITLITLIPLLLKVKVREFMLKKKTWDLGREVGIIMKQKEAAMHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQNCAVWMPNVEKTEVNLTHELNERNFNCSIPITDPDVVRIKGSDGVNILNSDSELAVASSGGSGEAGPVAAIRMPMLRVCNFKGGTPELRQTCYAILVLILPIGEPRSWSGQELEIIKVVADQVAVALSHAAILEESQLMREKLEERNRALQQAKRNAMMASQARNSFQKVMSDGMRRPMHSILGLLSTIQDDNLKNEQKLIVDAMLRTSNVLSNLINDAMDNSTKDDGRFPLEIRSFGLHSMIKEAACLAKCMCVYRGFGFLIEVDKSLPDNVMGDERRVFQVILHMVGNLLDRNHGEGILVFRVFAETGSQGRNDKGWTSWRPSSSSGDVNIRFELGINSSDSEVVSSVSSGLGGRKYTSDRVEDRLSFSICKRIVQLMQGNIWLVPYSHGFPQSMTLLLRFQLRPSIAIAISEPGESSERSNSNSMLRGLQVLLVDNDDVNRAVTQKLLQRLGCVVTSVSSGFECLTVIGPAGSSIQVILLALHTPDLDGFEVATRIRKFRSGNWPLIVALTASAEEDLWERCMQIGINGVIRKPVLLQGIASELRRILMQGNNVL. 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05888 759 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 754 - -
Seca8g05888 759 CDD REC_ETR-like 633 748 - -
Seca8g05888 759 Gene3D - 161 329 IPR029016 -
Seca8g05888 759 Gene3D - 615 753 - -
Seca8g05888 759 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 430 IPR036097 GO:0000155|GO:0007165
Seca8g05888 759 Gene3D - 330 427 - -
Seca8g05888 759 Pfam Response regulator receiver domain 635 742 IPR001789 GO:0000160
Seca8g05888 759 PIRSF Ethylen_sen_hybr_HK 1 759 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Seca8g05888 759 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Seca8g05888 759 Pfam His Kinase A (phospho-acceptor) domain 365 429 IPR003661 GO:0000155|GO:0007165
Seca8g05888 759 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Seca8g05888 759 CDD HATPase_ETR2_ERS2-EIN4-like 470 602 - -
Seca8g05888 759 Coils Coil 334 364 - -
Seca8g05888 759 FunFam Ethylene receptor 631 755 - -
Seca8g05888 759 FunFam Ethylene receptor 4 331 425 - -
Seca8g05888 759 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 418 590 IPR036890 -
Seca8g05888 759 SMART gaf_1 182 338 IPR003018 GO:0005515
Seca8g05888 759 Pfam GAF domain 182 328 IPR003018 GO:0005515
Seca8g05888 759 ProSiteProfiles Response regulatory domain profile. 634 752 IPR001789 GO:0000160
Seca8g05888 759 SMART REC_2 633 752 IPR001789 GO:0000160
Seca8g05888 759 Gene3D - 428 605 IPR036890 -
Seca8g05888 759 SUPERFAMILY CheY-like 630 752 IPR011006 -
Seca8g05888 759 SUPERFAMILY GAF domain-like 185 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05888 Seca-Chr8 151766126 151769035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05888 22 752 Miscellaneous Gene Families AT3G04580 58.602 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g05888 GAF 1.4e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05888 K14509 - gmx:100787425 1334.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05888 8 151766126 151769035 Seca8g05888 8 151766126 151769035 ECH
Seca8g04349 8 124105155 124109899 Seca8g05888 8 151766126 151769035 ECH