Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05881 ATGGATTCGGATCAAGGTAAACTTTTTATCGGTGGGATTTCATGGGATACTACTGAGGAGAAGCTGAAGGAGCATTTCAGCAACTATGGTGATGTTTTGAACACTTCAGTCATGAGGGAGAAAAACACTGGGAAGCCTAGAGGCTTTGGCTTTGTTGTCTTTGCAGATCCTTCTATTCTCGACAGGGTTGATGCAAAGAGGGCATTCTCAAGAGAGGATCAACAAATTTCTGTCACTTCTAGGGCTGGAAATCCCAATTCTGGTATGAATTCTGGAAATGGTGGAAATGTCAGGACCAAAAAGATATTTGTTGGAGGGCTGCCTCCTACCCTGACTGAAGAAAAATTTCGTCAGTACTTTGAGTCTTATGGGCATGTAACTGATGTAGTAGTCATGTATGACCAGAATACTGGACGACCACGGGGATTTGGTTTTATTTCATTTGATACTGAGGAGGCAGTTGATAGGGTTTTGCACAAGTCATTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCACTTCCCAAGGATGCTAATCCTGGTGCAAGTGGCCGTATGATGGGTGGTGCTGGAGGTGGTGGTGTTGGAATGGGTGGGTATCAAGGGTATGGGGCTTCTGGTGGCAACCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTATATGCAGCCCCAAAGTGCTGCAGGTGGATTCCCACCTTATGGTTCTTCTGCCTATAGTGCTCCTGGATATGGGTATGGTTCGGCTAATAATGGCATGGGTTATGGTGCATATGGAAGTTATGGTGGTGCCACTGCTGGGTATGGTGGACCTGCTGCTGCAACGTACGGGAATCCCAATGTCCCTAATGCTGCTTATGCTGGTGGTCCACCAGGTGGCCCAAGGAGTTCATGGCCTGCTCAGCCTCCCTCTGGTTATGGGTCTATGGGTTATGGGAACACTGCCCCTTGGGGTGCTCCAAGTGGCGGTGCAGGGTCTGGTGGTGGTGGCCCTGGTTCAGCAGCTGCAGGTCAATCCCCTAGTGGAGCTACTGGATATGGGAATCAAGGTTATGGATATGGTGGATATGGTGGGTATGGTGGAAGTGATAGTTCTTACGGGAATCCAGGTGTATATGGTGCTGTTGGAGGGCGCACTGGGAGTACTCCAAATAGTAATGCTAGTGGTCCCGGTGGGAGTGAACTACAAGGTAGTGGTGGCAGTGGAAGCTATATGGGCAGTGGCTATGGGGATGCAAATGGAAACTCAGGTTATGGAAACGCAGCTTGGAGATCTGAACAAGGTCAAGCACCTGGAAATTATGGGACTCCTCAGGGAAATGGTGCCCATGGTGGGCAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCCCAACAGCAGTAA 1404 0.4865 MDSDQGKLFIGGISWDTTEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFADPSILDRVDAKRAFSREDQQISVTSRAGNPNSGMNSGNGGNVRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMMGGAGGGGVGMGGYQGYGASGGNQNAYDGRMDSSRYMQPQSAAGGFPPYGSSAYSAPGYGYGSANNGMGYGAYGSYGGATAGYGGPAAATYGNPNVPNAAYAGGPPGGPRSSWPAQPPSGYGSMGYGNTAPWGAPSGGAGSGGGGPGSAAAGQSPSGATGYGNQGYGYGGYGGYGGSDSSYGNPGVYGAVGGRTGSTPNSNASGPGGSELQGSGGSGSYMGSGYGDANGNSGYGNAAWRSEQGQAPGNYGTPQGNGAHGGQVGYGGGYGGAQSRQAQQQ. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05881 467 CDD RRM2_Hrp1p 101 178 - -
Seca8g05881 467 MobiDBLite consensus disorder prediction 370 467 - -
Seca8g05881 467 MobiDBLite consensus disorder prediction 381 443 - -
Seca8g05881 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 168 IPR000504 GO:0003723
Seca8g05881 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 60 IPR000504 GO:0003723
Seca8g05881 467 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 467 - -
Seca8g05881 467 MobiDBLite consensus disorder prediction 290 314 - -
Seca8g05881 467 SUPERFAMILY RNA-binding domain, RBD 3 96 IPR035979 GO:0003676
Seca8g05881 467 Gene3D - 84 218 IPR012677 -
Seca8g05881 467 MobiDBLite consensus disorder prediction 72 97 - -
Seca8g05881 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 83 IPR000504 GO:0003723
Seca8g05881 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Seca8g05881 467 MobiDBLite consensus disorder prediction 325 344 - -
Seca8g05881 467 SUPERFAMILY RNA-binding domain, RBD 97 206 IPR035979 GO:0003676
Seca8g05881 467 Gene3D - 1 78 IPR012677 -
Seca8g05881 467 FunFam heterogeneous nuclear ribonucleoprotein 1 95 218 - -
Seca8g05881 467 SMART rrm1_1 7 79 IPR000504 GO:0003723
Seca8g05881 467 SMART rrm1_1 101 173 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05881 Seca-Chr8 151630059 151634135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05881 8 188 Eukaryotic Initiation Factors Gene Family AT2G23350 24.176 1.08e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05881 K14411 - gmx:100811267 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05881 8 151630059 151634135 Seca8g05881 8 151630059 151634135 ECH