Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05870 ATGTTGCAGGACGTTTTTGATCAGCCACTGCCATCAAAGGCGGAGGAGGAGCAACAACAACACCAACTCCCCATTGACGAAATTTCAAGCCCTCTCAGTGCTAGAATTTTCGAACTCTGTAACCCTGAATTGTTCCCAGAGGCTTTGCAGAATTCTGAGGTTACTTCCAGCTCAAATTGTTGCTATGAAGAGAACTCCTCATATGCCACAAATACATCTTTAGCTGTAGATGTAGAAAATAAATTCAATAGCAATAGCAATGCAGTCACCACTCCAACTAGCACCACCACCACCACCACTACCACCACCACCAACAACACAACCAACAGTAGTAATCTGTCTATTATCTTTGATTCTCAAGAAGAAATTGACAATGACATCTCTGCCTCCATAGACTTTTCCCTATCTTCAGCTTTCACTGTTCCCACATTTCTCCCAGTCACATCCCAGCAAGAACAATTTGATTTCTCTTCAATGCAGCCTCAGGCCCAACTAGCAGCATGTTCAGTTGTGGAGGGCTTCTCTCAGTATCCCACTGACCCTGTTGCACCTCTTATGGGAGCTCCATTACCACCTGTTTTTGAAGAGGACTGCATTAGTTCTGTCCCTTCTTATATGCCTCTGAACCCTTCATCTCCTTCTTGCACTTATCTCAGTCCTGGAATGGCACCATATATGCCTCCTGGACCCCTTACTACTGCTTTATCATCTGACAGTTCTGGGATATTTGGTAGCAACATTCTTCTTGGTTCTGAACTTCAGTCACAAGAACTTGAATACCAGGGAGAAAATGGTAGAATTTATTGTACAGATTCAATTCAGCGGGCGTTTAACCCTCCAGACCTTCAGGCACTCAGTTCTGAGAGTCCGCAACTAGTACCTGGGGCTGGGAGTTCTGCCACTCTGACACCAGAAATCTCAAACTTGGAGGATTCTACCTTCAAGGTTGGAAAACTTTCAGTTGAGCAAAGGAAGGAAAAGATTCATAGATACATGAAGAAAAGAAATGAAAGAAATTTCAGCAAGAAAATTAAGTATGCATGCCGCAAAACTCTGGCAGATAGCCGACCTCGGGTTAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGATACCAATAGAACTGCTAGTAGCAATCATGAAGAAGAAGAAGATGAAGAAGTAGTTGTGAAAGATGAAGAAGATATGGTTGATTCCTCAGATATATTTGCTCATATCAGTGGAGTGAACTCCTTCAAATGCAACTATTCCATGCAGTCATGGATTTGA 1269 0.4287 MLQDVFDQPLPSKAEEEQQQHQLPIDEISSPLSARIFELCNPELFPEALQNSEVTSSSNCCYEENSSYATNTSLAVDVENKFNSNSNAVTTPTSTTTTTTTTTTNNTTNSSNLSIIFDSQEEIDNDISASIDFSLSSAFTVPTFLPVTSQQEQFDFSSMQPQAQLAACSVVEGFSQYPTDPVAPLMGAPLPPVFEEDCISSVPSYMPLNPSSPSCTYLSPGMAPYMPPGPLTTALSSDSSGIFGSNILLGSELQSQELEYQGENGRIYCTDSIQRAFNPPDLQALSSESPQLVPGAGSSATLTPEISNLEDSTFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDTNRTASSNHEEEEDEEVVVKDEEDMVDSSDIFAHISGVNSFKCNYSMQSWI. 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05870 422 MobiDBLite consensus disorder prediction 362 391 - -
Seca8g05870 422 ProSiteProfiles CCT domain profile. 324 366 IPR010402 GO:0005515
Seca8g05870 422 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 58 383 IPR045281 GO:0009909
Seca8g05870 422 Pfam CCT motif 324 366 IPR010402 GO:0005515
Seca8g05870 422 MobiDBLite consensus disorder prediction 362 381 - -
Seca8g05870 422 MobiDBLite consensus disorder prediction 1 25 - -
Seca8g05870 422 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05870 Seca-Chr8 151498482 151502027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05870 294 373 C2C2-CO-like Transcription Factor Family AT5G24930 37.647 2.92e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g05870 CCT 5.6e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05870 - - aprc:113871720 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05870 8 151498482 151502027 Seca8g05870 8 151498482 151502027 ECH