Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05869 ATGCTATCTAATTTTGCTTTGGAGCAACAATTACACACAGCAAGGCAAGAGCTAAGTCATGCTCTCTATCAGCATGATGCTGCTTGCCGAGTGATTGCAAGAGTTACAAAGGAACGAGATGAAGCAAGGTCGTTGCTTGCACAGGCAGAAAGGGAATTCACCGTTTCTGCTCCCAATGCTGCAGCAGCAAATACGTCTTTCAGCAATAGGAAAAGAGCTACTGAGGATGAGGATCTGGCCCCTGATGGGAAAAAAATACATACTGGAATAACTTCTAGCATAATTTCCGAGCTAGATGAATGCAAGGATGCTCTTTTCCAGCAGAGGAAAAGGCGGCAGATTCCAGAAACTTTGGCTACTGTTGATGCTCTAGAGGAATATACCCAAATATCTAGTCATCCCATTCACAAAACACACAAGCCAGGTATTGTCTCTCTTGATGTCCTCTATTCTAAGGACATAATTGCAACTGGAGGGATTGATACGAATGCTGTTATTTTTGACCGATCATCAGGACAGATATTATCCACACTCAGTGGTCACTCAAAAAAGGTTACCAGCATAAAGTTTGTAGCTCAGGGTGGTTTGTTAGTAACTGGTTCAGCAGATAAGACAGTTCGTTTGTGGCAAGTGTCAGATGATGGTATTTATAACTGCAGGGATATCTTGAAGGATCATACAGCTGAGGTGAAGGCTGTCGCTGTCCATGCTACCAATAGTTACTTAGTGTCTGCTTCACTTGACAGCACTTGGTGCTTTTATGAACTTTCTTCTGGGACATGTCTAACGCAGGTTTCAGACCCTTCAGGCTCTTCTGAAGGCTATACAACTGCAGCTCTTCATCCTGATGGTCTCATTCTTGGAACTGGCACCTCAGAAGCTGTTGTTAAGATCTGGAGTGTAAAATCTCAGGAAAGGGTTGCTACGTTGGAAGGACATGTAGGGCCAGTAACTGCGATATCCTTTTCGGAGAATGGTTACTTTGTGGCGACTGCAGCTCATAATGGTGTAAAGCTTTGGGATCTACGTAAAGTGAATAACTTCCTGAATTTTGCTCCATATGACTCTGAAACTCCAACATCAGTGGACTTCGACCACAGTGGATCCTACATTGCAGTTGCAGGCTCTGATACAAGGTGA 1140 0.4377 MLSNFALEQQLHTARQELSHALYQHDAACRVIARVTKERDEARSLLAQAEREFTVSAPNAAAANTSFSNRKRATEDEDLAPDGKKIHTGITSSIISELDECKDALFQQRKRRQIPETLATVDALEEYTQISSHPIHKTHKPGIVSLDVLYSKDIIATGGIDTNAVIFDRSSGQILSTLSGHSKKVTSIKFVAQGGLLVTGSADKTVRLWQVSDDGIYNCRDILKDHTAEVKAVAVHATNSYLVSASLDSTWCFYELSSGTCLTQVSDPSGSSEGYTTAALHPDGLILGTGTSEAVVKIWSVKSQERVATLEGHVGPVTAISFSENGYFVATAAHNGVKLWDLRKVNNFLNFAPYDSETPTSVDFDHSGSYIAVAGSDTR. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05869 379 CDD WD40 136 377 - -
Seca8g05869 379 SMART WD40_4 171 210 IPR001680 GO:0005515
Seca8g05869 379 SMART WD40_4 216 255 IPR001680 GO:0005515
Seca8g05869 379 SMART WD40_4 303 341 IPR001680 GO:0005515
Seca8g05869 379 SMART WD40_4 128 168 IPR001680 GO:0005515
Seca8g05869 379 SMART WD40_4 258 300 IPR001680 GO:0005515
Seca8g05869 379 Pfam WD domain, G-beta repeat 307 341 IPR001680 GO:0005515
Seca8g05869 379 Pfam WD domain, G-beta repeat 172 209 IPR001680 GO:0005515
Seca8g05869 379 SUPERFAMILY WD40 repeat-like 134 378 IPR036322 GO:0005515
Seca8g05869 379 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Seca8g05869 379 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 212 - -
Seca8g05869 379 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 350 IPR001680 GO:0005515
Seca8g05869 379 Pfam Prp19/Pso4-like 1 48 IPR013915 -
Seca8g05869 379 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 343 - -
Seca8g05869 379 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 212 IPR001680 GO:0005515
Seca8g05869 379 Coils Coil 32 52 - -
Seca8g05869 379 MobiDBLite consensus disorder prediction 64 84 - -
Seca8g05869 379 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 264 IPR001680 GO:0005515
Seca8g05869 379 MobiDBLite consensus disorder prediction 70 84 - -
Seca8g05869 379 Gene3D - 115 379 IPR015943 GO:0005515
Seca8g05869 379 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 379 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05869 Seca-Chr8 151477097 151483228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05869 1 379 U-box Gene Family AT1G04510 66.491 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05869 K10599 - gmx:100527039 609.372