Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05857 ATGTATTGGGGAGTTATGGCAGGAAACATGGGATGGGGTGTAGCAGAAGAAGATGGATGGAGGAAGGGACCTTGGACTGCTGAGGAGGACAGGTTACTCAATGAGTATGTCAAGTTGCATGGTGAAGGAAGATGGAACTCTGTTGCTAGGCTTACAGGGCTCAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTACCTGAGACCAGACCTCAAGAAGGGTCAGATAACACCACAAGAAGAAAGCATAATTCAAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGACAATGAGATCAAGAATTATTGGAGGACCCATTTCAAGAAAAAGGCAAAAACCCCTTCTGATGCTGCTGAAAAGGCTAAAATTCGTTCTTTCAGGAAGCAGCAATTTAGACAGCAACAACAGAATTTGATGCAGCAGCAAGTTCAGCAGCAGCAACAACAATTGCAATTCAACTTGGACATGAAAGGGATCATAAACTTGCTTGAGGAAGATGATTATATAGTTCCTTCTATATCTCAAGAGACACAAGAATTGGTCAGCATGTACCCAAACACACCAGAACAGATGAGCTACTTTATGCTCAATGGTAATGTCTCTGCACCAGAGTATTCCTCAAATGAAGAAATTTTGTGGGATGGGCTGTGGAACTTGGATGATGATGATGTTCTTTGCAATTCAATGCAGTTACTGCTACAAACAAAGCCAGTCTGCACAATTTAG 765 0.4288 MYWGVMAGNMGWGVAEEDGWRKGPWTAEEDRLLNEYVKLHGEGRWNSVARLTGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKTPSDAAEKAKIRSFRKQQFRQQQQNLMQQQVQQQQQQLQFNLDMKGIINLLEEDDYIVPSISQETQELVSMYPNTPEQMSYFMLNGNVSAPEYSSNEEILWDGLWNLDDDDVLCNSMQLLLQTKPVCTI. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05857 254 Gene3D - 79 123 - -
Seca8g05857 254 Coils Coil 141 161 - -
Seca8g05857 254 CDD SANT 24 69 IPR001005 -
Seca8g05857 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Seca8g05857 254 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Seca8g05857 254 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Seca8g05857 254 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Seca8g05857 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Seca8g05857 254 FunFam Myb transcription factor 22 74 - -
Seca8g05857 254 CDD SANT 79 120 IPR001005 -
Seca8g05857 254 SMART sant 21 71 IPR001005 -
Seca8g05857 254 SMART sant 74 122 IPR001005 -
Seca8g05857 254 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 190 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca8g05857 254 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Seca8g05857 254 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Seca8g05857 254 FunFam MYB-related transcription factor 79 123 - -
Seca8g05857 254 Gene3D - 22 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05857 Seca-Chr8 151312056 151313666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05857 17 233 MYB Transcription Factor Family AT3G24310 61.638 2.90e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g05857 Myb_DNA-binding 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05857 K09422 - gmx:100813935 359.377