Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05852 ATGAAGAAGAGGTTGAAGGAGATCGAAGAAGAAGCTAGCGCCCTTCGCGAAATGCAAGCCAAGGTTGAGAAAGAGATGGGCGCTGTCCAAGATTCGTCTGGCTCTTCTGCAACTCAAGCTGAAAAGGAGGAAGTGGATTCTCGATCAATCTATGTTGGTAATGTTGACTATGCATGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCATGTGGAACTGTGAACAGAGTGACTATATTGACTGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTGGAGTTTGTTGAGATTGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCTGCTAAGCGTACAAATGTTCCTGGAATGAAACAGTATTATGGAAGAAGACCTACTGGTTTCCGATCTAGGAGGCCTTTCATGCCTTCTCCATTCTATCCACCATATGGTTATGGAAGGTTTCCAAGGTATAGAAGACCCACCCGATACAGGCCATACTAG 519 0.4355 MKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGSSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYYGRRPTGFRSRRPFMPSPFYPPYGYGRFPRYRRPTRYRPY. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05852 172 Coils Coil 1 25 - -
Seca8g05852 172 SMART rrm1_1 49 120 IPR000504 GO:0003723
Seca8g05852 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 118 IPR000504 GO:0003723
Seca8g05852 172 CDD RRM_II_PABPs 49 120 - -
Seca8g05852 172 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 160 - -
Seca8g05852 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 124 IPR000504 GO:0003723
Seca8g05852 172 FunFam Polyadenylate-binding protein 1 42 128 - -
Seca8g05852 172 SUPERFAMILY RNA-binding domain, RBD 38 148 IPR035979 GO:0003676
Seca8g05852 172 Gene3D - 1 121 IPR012677 -
Seca8g05852 172 MobiDBLite consensus disorder prediction 23 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05852 Seca-Chr8 151256672 151264323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05852 49 120 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 3.66e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05852 K14396 - gmx:100527139 270.396